TissueCFM001737's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: HMG | 0.002303262 | TF family |
| GPI-anchor transamidase complex | 0.003722304 | GO:0042765 |
| attachment of GPI anchor to protein | 0.003722304 | GO:0016255 |
| GPI-anchor transamidase activity | 0.004875166 | GO:0003923 |
| Base excision repair | 0.006638137 | KEGG pathway |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | 0.006638137 | KEGG pathway |
| cell wall organization or biogenesis | 0.010080281 | GO:0071554 |
| O-acetyltransferase activity | 0.017510444 | GO:0016413 |
| Golgi apparatus | 0.044658497 | GO:0005794 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009529 | AT3G07140 (0) | GPI transamidase component Gpi16 subunit family protein |
| CRO_T011622 | AT2G45260 (0) | Plant protein of unknown function (DUF641) |
| CRO_T013354 | AT5G22040 (8.00E-34) | unknown protein |
| CRO_T025771 | AT1G20693 (1.00E-10) | HMG BETA 1|HIGH MOBILITY GROUP BETA 1; HMGB2|high mobility group B2; NFD02|NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02; NFD2|NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2 |
| CRO_T027867 | AT4G11090 (8.00E-131) | TBL23|TRICHOME BIREFRINGENCE-LIKE 23 |
| CRO_T031851 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000636 | eugenol and isoeugenol biosynthesis L-glutamine degradation I L-histidine biosynthesis pseudouridine degradation Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX Transcription_related, Transcription factor: BES1 DNA N-glycosylase activity beta-N-acetylhexosaminidase activity transferase activity, transferring pentosyl groups Transcription_related, Transcription factor: C2C2-GATA Ubiquitin_Proteasome_system, E1: ThiF THO complex DNA-directed RNA polymerase V complex Golgi apparatus Cul4-RING E3 ubiquitin ligase complex production of ta-siRNAs involved in RNA interference regulation of production of siRNA involved in chromatin silencing by small RNA RNA-directed DNA methylation | details |
| TissueCFM001193 | Golgi apparatus cyanidin diglucoside biosynthesis (acyl-glucose dependent) delphinidin diglucoside biosynthesis (acyl-glucose dependent) pelargonidin diglucoside biosynthesis (acyl-glucose dependent) violdelphin biosynthesis plasma membrane anthocyanidin modification (Arabidopsis) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc mitochondrial membrane mitochondrial transport regulation of signal transduction Starch and sucrose metabolism cellular transition metal ion homeostasis protein processing metal ion transport | details |
| TissueCFM001228 | Renin-angiotensin system S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I DNA-directed RNA polymerase V complex microfibril regulation of production of siRNA involved in chromatin silencing by small RNA RNA-directed DNA methylation production of ta-siRNAs involved in RNA interference THO complex Cul4-RING E3 ubiquitin ligase complex negative regulation of abscisic acid-activated signaling pathway glycerophosphodiester phosphodiesterase activity dipeptidyl-peptidase activity Transcription_related, Transcription factor: C2C2-GATA Transcription_related, Transcription factor: HSF | details |
| TissueCFM001537 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis GPI-anchor transamidase complex rosmarinic acid biosynthesis I L-tyrosine:2-oxoglutarate aminotransferase activity GPI-anchor transamidase activity L-phenylalanine biosynthesis III (cytosolic, plants) cytosol attachment of GPI anchor to protein 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process biosynthetic process Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Biosynthesis of amino acids RNA transport | details |
| TissueCFM001596 | transition metal ion binding metal ion transport cellular transition metal ion homeostasis | details |
| TissueCFM001790 | Other types of O-glycan biosynthesis Transcription_related, Transcription regulator: Pseudo ARR-B formation of glycosidic bonds, GlycosylTransferases: GTnc Circadian rhythm - plant Transcription_related, Transcription factor: G2-like reactive oxygen species metabolic process phosphorelay signal transduction system auxin polar transport response to heat protein disulfide oxidoreductase activity transferase activity, transferring glycosyl groups electron carrier activity cell redox homeostasis | details |
Expression profiles
 Show details about module gene expression profiling |