TissueCFM001221's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.1.7: APG1 Like Kinase | 0.006072695 | kinase family |
| protein serine/threonine kinase activity | 0.006290934 | GO:0004674 |
| Transcription_related, Transcription regulator: IWS1 | 0.008093936 | TF family |
| protein phosphorylation | 0.018857962 | GO:0006468 |
| recognition of pollen | 0.018857962 | GO:0048544 |
| cellular protein metabolic process | 0.018857962 | GO:0044267 |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.020201974 | kinase family |
| ATP binding | 0.036756028 | GO:0005524 |
| signal transduction | 0.039754734 | GO:0007165 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006375 | AT4G40070 (7.00E-24) | RING/U-box superfamily protein |
| CRO_T017726 | AT3G53930 (4.00E-13) | Protein kinase superfamily protein |
| CRO_T017900 | AT5G58380 (3.00E-176) | CIPK10|CBL-INTERACTING PROTEIN KINASE 10; SIP1|SOS3-interacting protein 1; SNRK3.8|SNF1-RELATED PROTEIN KINASE 3.8 |
| CRO_T025303 | - | - |
| CRO_T029665 | AT3G11760 (0) | unknown protein |
| CRO_T030591 | AT5G10190 (0) | Major facilitator superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000626 | Stilbenoid, diarylheptanoid and gingerol biosynthesis integral component of membrane drug transmembrane transporter activity antiporter activity | details |
| TissueCFM000967 | entrainment of circadian clock animal organ development cAMP-dependent protein kinase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase photoreceptor activity response to UV-B cell surface receptor signaling pathway chromatin calcium-dependent phospholipid binding Transcription_related, Transcription factor: NAC | details |
| TissueCFM001186 | cellulose biosynthesis xylan biosynthesis cell part cellulose synthase (UDP-forming) activity Transcription_related, Transcription regulator: IWS1 Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) cellulose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc cell wall organization | details |
| TissueCFM001246 | Choline metabolism in cancer Stilbenoid, diarylheptanoid and gingerol biosynthesis indole-3-acetyl-amide conjugate biosynthesis syringetin biosynthesis phenylpropanoids methylation (ice plant) ammonium transmembrane transport organic cation transport nitrogen utilization 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity substrate-specific transmembrane transporter activity myricetin 3'-O-methyltransferase activity ammonium transmembrane transporter activity | details |
| TissueCFM001518 | metallocarboxypeptidase activity Transcription_related, Transcription regulator: IWS1 extracellular space transferase activity, transferring glycosyl groups | details |
| TissueCFM001654 | adenosine kinase activity carotene 7,8-desaturase activity cAMP-dependent protein kinase activity Carotenoid biosynthesis 9,9'-dicis-carotene:quinone oxidoreductase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity ribokinase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: zf-HD trans-lycopene biosynthesis II (plants) neurosporene biosynthesis chromoplast anatomical structure development carotenoid biosynthetic process 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene AMP biosynthetic process single-organism developmental process D-ribose metabolic process carbohydrate phosphorylation cell surface receptor signaling pathway glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Transcription_related, Transcription factor: HB polysaccharide binding | details |
| TissueCFM001664 | Other types of O-glycan biosynthesis Phagosome formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: zf-HD D-myo-inositol (1,4,5)-trisphosphate degradation cAMP-dependent protein kinase activity tubulin complex cellular response to gravity glycolysis I (from glucose 6-phosphate) response to cadmium ion phosphatidylinositol dephosphorylation microtubule-based process cell surface receptor signaling pathway | details |
| TissueCFM001848 | cAMP-dependent protein kinase activity acylglycerol lipase activity phospholipase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity 9,9'-dicis-carotene:quinone oxidoreductase activity carotene 7,8-desaturase activity ion channel activity Carotenoid biosynthesis Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase trans-lycopene biosynthesis II (plants) neurosporene biosynthesis phospholipid remodeling (phosphatidylcholine, yeast) phosphatidylcholine acyl editing phospholipases 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene carotenoid biosynthetic process chromoplast lipid catabolic process cell surface receptor signaling pathway ion transmembrane transport polysaccharide binding | details |
Expression profiles
 Show details about module gene expression profiling |