TissueCFM000626's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Stilbenoid, diarylheptanoid and gingerol biosynthesis | 0.016882428 | KEGG pathway |
| integral component of membrane | 0.025864611 | GO:0016021 |
| drug transmembrane transporter activity | 0.033870931 | GO:0015238 |
| antiporter activity | 0.033870931 | GO:0015297 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000580 | AT1G11670 (7.00E-67) | MATE efflux family protein |
| CRO_T000784 | AT1G29000 (1.00E-05) | Heavy metal transport/detoxification superfamily protein |
| CRO_T001087 | - | - |
| CRO_T003256 | AT4G38040 (7.00E-75) | Exostosin family protein |
| CRO_T003780 | AT3G63470 (5.00E-135) | scpl40|serine carboxypeptidase-like 40 |
| CRO_T006375 | AT4G40070 (7.00E-24) | RING/U-box superfamily protein |
| CRO_T007690 | AT1G22900 (7.00E-38) | Disease resistance-responsive (dirigent-like protein) family protein |
| CRO_T015009 | AT3G12360 (7.00E-22) | ITN1|INCREASED TOLERANCE TO NACL |
| CRO_T016224 | AT2G38100 (3.00E-75) | proton-dependent oligopeptide transport (POT) family protein |
| CRO_T016807 | AT5G46330 (1.00E-141) | FLS2|FLAGELLIN-SENSITIVE 2 |
| CRO_T016910 | AT3G45650 (2.00E-127) | NAXT1|nitrate excretion transporter1; NPF2.7|NRT1/ PTR family 2.7 |
| CRO_T016930 | AT4G10490 (2.00E-46) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T017919 | AT5G54160 (7.00E-36) | ATOMT1|O-methyltransferase 1; COMT1|caffeate O-methyltransferase 1 |
| CRO_T020081 | AT1G16670 (1.00E-88) | Protein kinase superfamily protein |
| CRO_T020732 | AT3G23130 (6.00E-16) | FLO10|FLORAL DEFECTIVE 10; FON1|FLORAL ORGAN NUMBER 1; SUP|SUPERMAN |
| CRO_T021146 | AT2G36380 (2.00E-39) | ABCG34|ATP-binding cassette G34; ATPDR6|PLEIOTROPIC DRUG RESISTANCE 6 |
| CRO_T021393 | AT5G19740 (5.00E-38) | Peptidase M28 family protein |
| CRO_T021664 | AT2G37800 (7.00E-16) | Cysteine/Histidine-rich C1 domain family protein |
| CRO_T022705 | AT1G65610 (3.00E-151) | ATGH9A2|GLYCOSYL HYDROLASE 9A2; KOR2|KORRIGAN 2 |
| CRO_T024267 | AT3G21690 (2.00E-53) | MATE efflux family protein |
| CRO_T025834 | AT2G38290 (3.00E-131) | AMT2|ammonium transporter 2; AMT2; 1|AMMONIUM TRANSPORTER 2; 1 |
| CRO_T026532 | AT3G28050 (6.00E-63) | UMAMIT41|Usually multiple acids move in and out Transporters 41 |
| CRO_T026730 | AT1G28230 (2.00E-82) | PUP1|purine permease 1 |
| CRO_T027559 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000534 | protein-disulfide reductase activity photoreceptor activity entrainment of circadian clock pollen tube guidance regulation of pollen tube growth Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) chromatin isoflavonoid biosynthesis II benzoate biosynthesis I (CoA-dependent, β-oxidative) cytosol recognition of pollen pollen tube growth response to UV-B Transcription_related, Transcription factor: bHLH | details |
| TissueCFM001119 | Transcription_related, Transcription factor: NF-YA regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation Antigen processing and presentation acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process benzoate biosynthesis I (CoA-dependent, β-oxidative) glucose import regulation of catalytic activity glucose transmembrane transport proton transport transferase activity, transferring acyl groups sugar:proton symporter activity glucose transmembrane transporter activity | details |
| TissueCFM001211 | integral component of membrane negative regulation of innate immune response nucleoside transmembrane transport xylogalacturonan biosynthesis benzoate biosynthesis I (CoA-dependent, β-oxidative) defense response to fungus nucleoside transmembrane transporter activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | details |
| TissueCFM001221 | Protein_kinases_phosphatases, PPC:4.1.7: APG1 Like Kinase protein serine/threonine kinase activity Transcription_related, Transcription regulator: IWS1 protein phosphorylation recognition of pollen cellular protein metabolic process Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) ATP binding signal transduction | details |
| TissueCFM001246 | Choline metabolism in cancer Stilbenoid, diarylheptanoid and gingerol biosynthesis indole-3-acetyl-amide conjugate biosynthesis syringetin biosynthesis phenylpropanoids methylation (ice plant) ammonium transmembrane transport organic cation transport nitrogen utilization 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity substrate-specific transmembrane transporter activity myricetin 3'-O-methyltransferase activity ammonium transmembrane transporter activity | details |
| TissueCFM001255 | Other types of O-glycan biosynthesis root hair cell development cell wall pectin biosynthetic process arabinosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase Phenylpropanoid biosynthesis serine-type carboxypeptidase activity non-membrane spanning protein tyrosine kinase activity protein glycosylation hydrogen peroxide catabolic process peptidyl-tyrosine phosphorylation proteolysis involved in cellular protein catabolic process | details |
| TissueCFM001256 | formation of glycosidic bonds, GlycosylTransferases: GTnc Other types of O-glycan biosynthesis arabinosyltransferase activity root hair cell development cell wall pectin biosynthetic process carboxypeptidase activity serine-type carboxypeptidase activity Phenylpropanoid biosynthesis protein glycosylation peroxidase activity | details |
Expression profiles
 Show details about module gene expression profiling |