TissueCFM001295's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 3-phosphoinositide biosynthesis | 0.006367434 | plantCyc |
| phosphatidylinositol phosphate kinase activity | 0.008044024 | GO:0016307 |
| photoreceptor activity | 0.008044024 | GO:0009881 |
| COPII vesicle coat | 0.008859354 | GO:0030127 |
| HAUS complex | 0.008859354 | GO:0070652 |
| protein-tetrapyrrole linkage | 0.01832253 | GO:0017006 |
| detection of visible light | 0.01832253 | GO:0009584 |
| spindle assembly | 0.02014585 | GO:0051225 |
| red, far-red light phototransduction | 0.02014585 | GO:0009585 |
| Circadian rhythm - plant | 0.022395957 | KEGG pathway |
| phosphorelay sensor kinase activity | 0.023566183 | GO:0000155 |
| Inositol phosphate metabolism | 0.023810781 | KEGG pathway |
| phosphorelay signal transduction system | 0.031679371 | GO:0000160 |
| signal transduction by protein phosphorylation | 0.031679371 | GO:0023014 |
| phosphatidylinositol phosphorylation | 0.031679371 | GO:0046854 |
| protein-chromophore linkage | 0.031679371 | GO:0018298 |
| ER to Golgi vesicle-mediated transport | 0.031679371 | GO:0006888 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002710 | AT1G09570 (0) | FHY2|FAR RED ELONGATED HYPOCOTYL 2; FRE1|FAR RED ELONGATED 1; HY8|ELONGATED HYPOCOTYL 8; PHYA|phytochrome A |
| CRO_T004036 | AT2G21630 (0) | Sec23/Sec24 protein transport family protein |
| CRO_T004293 | AT1G34260 (2.00E-71) | FAB1D|FORMS APLOID AND BINUCLEATE CELLS 1A |
| CRO_T005122 | - | - |
| CRO_T013331 | AT4G11270 (0) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T028586 | AT5G40740 (0) | 6-Aug|augmin subunit 6 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001296 | phosphatidic acid transporter activity photoreceptor activity phospholipid transport protein-tetrapyrrole linkage detection of visible light mitochondrial intermembrane space red, far-red light phototransduction phosphorelay sensor kinase activity spliceosomal complex Circadian rhythm - plant phosphorelay signal transduction system signal transduction by protein phosphorylation protein-chromophore linkage mRNA splicing, via spliceosome protein homodimerization activity | details |
| TissueCFM001484 | peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity NatA complex N-terminal peptidyl-serine acetylation internal protein amino acid acetylation N-terminal peptidyl-glutamic acid acetylation Transcription_related, Transcription regulator: DDT protein monoubiquitination histone ubiquitination innate immune response HAUS complex cytosolic ribosome reproductive structure development spindle assembly Transcription_related, Transcription regulator: GNAT post-embryonic development single-organism cellular process Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |