TissueCFM001296's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphatidic acid transporter activity | 0.004048762 | GO:1990050 |
| photoreceptor activity | 0.005059831 | GO:0009881 |
| phospholipid transport | 0.008654064 | GO:0015914 |
| protein-tetrapyrrole linkage | 0.008654064 | GO:0017006 |
| detection of visible light | 0.008654064 | GO:0009584 |
| mitochondrial intermembrane space | 0.010119663 | GO:0005758 |
| red, far-red light phototransduction | 0.014272877 | GO:0009585 |
| phosphorelay sensor kinase activity | 0.01482354 | GO:0000155 |
| spliceosomal complex | 0.021226183 | GO:0005681 |
| Circadian rhythm - plant | 0.022395957 | KEGG pathway |
| phosphorelay signal transduction system | 0.027380932 | GO:0000160 |
| signal transduction by protein phosphorylation | 0.027380932 | GO:0023014 |
| protein-chromophore linkage | 0.027380932 | GO:0018298 |
| mRNA splicing, via spliceosome | 0.031700464 | GO:0000398 |
| protein homodimerization activity | 0.031740633 | GO:0042803 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001687 | AT4G03120 (2.00E-22) | C2H2 and C2HC zinc fingers superfamily protein |
| CRO_T002710 | AT1G09570 (0) | FHY2|FAR RED ELONGATED HYPOCOTYL 2; FRE1|FAR RED ELONGATED 1; HY8|ELONGATED HYPOCOTYL 8; PHYA|phytochrome A |
| CRO_T014425 | AT2G25660 (0) | emb2410|embryo defective 2410 |
| CRO_T022081 | AT5G13070 (9.00E-89) | MSF1-like family protein |
| CRO_T030101 | AT1G15960 (4.00E-16) | NRAMP6|NRAMP metal ion transporter 6 |
| CRO_T033523 | AT1G29170 (6.00E-58) | ATSCAR3|WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000264 | NatA complex N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity Transcription_related, Transcription regulator: GNAT cytosolic ribosome RNA binding ARF guanyl-nucleotide exchange factor activity spliceosomal complex regulation of ARF protein signal transduction ribonuclease III activity MicroRNAs in cancer RNA phosphodiester bond hydrolysis, endonucleolytic positive regulation of GTPase activity RNA processing mRNA splicing, via spliceosome RNA degradation | details |
| TissueCFM000326 | Ubiquitin_Proteasome_system, E3 adaptor: DWD protein targeting to peroxisome histone H3-K36 methylation histone H3-K4 methylation negative regulation of flower development 1-phosphatidylinositol-4-phosphate 5-kinase activity 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis phosphatidylinositol phosphorylation Cul4-RING E3 ubiquitin ligase complex spliceosomal complex mRNA splicing, via spliceosome Inositol phosphate metabolism Peroxisome RNA degradation | details |
| TissueCFM000458 | peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity recognition of pollen Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) mRNA splicing, via spliceosome Spliceosome spliceosomal complex | details |
| TissueCFM001066 | N-terminal peptidyl-glutamic acid acetylation positive regulation of transcription from RNA polymerase I promoter internal protein amino acid acetylation N-terminal peptidyl-serine acetylation N-terminal peptidyl-methionine acetylation t-UTP complex NatB complex NatA complex peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity cytosolic ribosome 90S preribosome Transcription_related, Transcription regulator: GNAT spliceosomal complex peptide alpha-N-acetyltransferase activity snoRNA binding hydroquinone:oxygen oxidoreductase activity lignin catabolic process Autophagy - yeast maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) mRNA splicing, via spliceosome small-subunit processome Ribosome biogenesis in eukaryotes | details |
| TissueCFM001067 | N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation N-terminal peptidyl-serine acetylation peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity NatA complex cytosolic ribosome spliceosomal complex Transcription_related, Transcription regulator: GNAT mRNA splicing, via spliceosome Spliceosome | details |
| TissueCFM001199 | D-myo-inositol (1,4,5)-trisphosphate degradation Transcription_related, Transcription factor: SBP Transcription_related, Transcription regulator: GNAT peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity long-day photoperiodism N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation stem cell fate determination internal protein amino acid acetylation meristem maintenance cellular calcium ion homeostasis nuclear-transcribed mRNA catabolic process, nonsense-mediated decay pollen maturation NatA complex sugar mediated signaling pathway phosphatidylinositol dephosphorylation cellular response to phosphate starvation pollen germination response to wounding nucleic acid metabolic process cellular macromolecule metabolic process cation transmembrane transport salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway cation-transporting ATPase activity | details |
| TissueCFM001209 | cytoskeleton-dependent intracellular transport regulation of microtubule-based process protein localization activation of GTPase activity regulation of vesicle fusion Rab GTPase binding ATP-dependent microtubule motor activity, plus-end-directed GTPase activator activity mRNA splicing, via spliceosome microtubule-based movement root development Spliceosome microtubule kinesin complex spliceosomal complex endomembrane system microtubule binding | details |
| TissueCFM001217 | Peroxisome phospholipid transport polarity specification of adaxial/abaxial axis determination of bilateral symmetry xylem development radial pattern formation protein targeting to peroxisome meristem initiation phosphatidic acid transporter activity xylem and phloem pattern formation benzoate biosynthesis I (CoA-dependent, β-oxidative) mitochondrial intermembrane space cell differentiation flower development cellular protein metabolic process transcription regulatory region DNA binding cysteine-type peptidase activity Transcription_related, Transcription factor: ARF Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001295 | 3-phosphoinositide biosynthesis phosphatidylinositol phosphate kinase activity photoreceptor activity COPII vesicle coat HAUS complex protein-tetrapyrrole linkage detection of visible light spindle assembly red, far-red light phototransduction Circadian rhythm - plant phosphorelay sensor kinase activity Inositol phosphate metabolism phosphorelay signal transduction system signal transduction by protein phosphorylation phosphatidylinositol phosphorylation protein-chromophore linkage ER to Golgi vesicle-mediated transport | details |
| TissueCFM001371 | actin binding N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation N-terminal peptidyl-serine acetylation peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity NatA complex phosphatidylinositol-mediated signaling cytoskeleton organization Transcription_related, Transcription regulator: GNAT Ubiquitin_Proteasome_system, DUB: USP 1-phosphatidylinositol 4-kinase activity DNA topoisomerase type I activity 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis motor activity myosin complex cytosolic ribosome spliceosomal complex phosphatidylinositol phosphorylation single-organism process mRNA splicing, via spliceosome Inositol phosphate metabolism | details |
| TissueCFM001567 | site-specific DNA-methyltransferase (adenine-specific) activity phosphatidic acid transporter activity protein methyltransferase activity DNA methylation on adenine cellular response to stimulus tissue development plant organ development phospholipid transport response to virus negative regulation of defense response to virus anatomical structure morphogenesis regulation of response to stimulus mitochondrial intermembrane space protein methylation response to organic substance response to bacterium Tyrosine metabolism defense response to other organism response to osmotic stress single-organism cellular process translational initiation regulation of cellular process MAPK signaling pathway - plant RNA transport | details |
| TissueCFM001573 | Fanconi anemia pathway queuine tRNA-ribosyltransferase activity RNA polymerase II core binding negative regulation of flower development histone methylation queuosine biosynthetic process regulation of histone H3-K4 methylation Cdc73/Paf1 complex nucleic acid metabolic process positive regulation of transcription, DNA-templated Transcription_related, Transcription regulator: SNF2 | details |
| TissueCFM001601 | peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation N-terminal peptidyl-serine acetylation cellulose biosynthesis NatA complex Autophagy - yeast cytosolic ribosome spliceosomal complex plasma membrane zinc ion binding cellulose synthase (UDP-forming) activity recognition of pollen formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription regulator: GNAT cellulose biosynthetic process mRNA splicing, via spliceosome Spliceosome | details |
| TissueCFM001673 | N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation Transcription_related, Transcription regulator: GNAT long-day photoperiodism peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity NatA complex nuclear-transcribed mRNA catabolic process, nonsense-mediated decay G-protein beta/gamma-subunit complex binding G-protein coupled receptor signaling pathway sugar mediated signaling pathway response to wounding salicylic acid mediated signaling pathway cytoplasmic mRNA processing body cytosolic ribosome spliceosomal complex jasmonic acid mediated signaling pathway mRNA splicing, via spliceosome defense response to bacterium signal transducer activity | details |
| TissueCFM001729 | phosphatidic acid transporter activity cell wall repair phospholipid transport mitochondrial intermembrane space mitochondrial proton-transporting ATP synthase complex cobalt ion binding zinc ion binding pollen development root development defense response to fungus defense response to bacterium copper ion binding Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |