TissueCFM001312's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UDP-glucuronate decarboxylase activity | 0.004020532 | GO:0048040 |
| fatty-acyl-CoA synthase activity | 0.004020532 | GO:0004321 |
| glutathione peroxidase activity | 0.004020532 | GO:0004602 |
| Transcription_related, Transcription factor: C2C2-Dof | 0.004955011 | TF family |
| Arachidonic acid metabolism | 0.007440429 | KEGG pathway |
| glutathione-peroxide redox reactions | 0.009182457 | plantCyc |
| reactive oxygen species degradation | 0.009182457 | plantCyc |
| UDP-D-xylose biosynthesis | 0.009182457 | plantCyc |
| jasmonic acid biosynthetic process | 0.015505016 | GO:0009695 |
| jasmonic acid biosynthesis | 0.017180517 | plantCyc |
| Amino sugar and nucleotide sugar metabolism | 0.024958347 | KEGG pathway |
| Peroxisome | 0.035201343 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009270 | AT2G27860 (1.00E-23) | AXS1|UDP-D-apiose/UDP-D-xylose synthase 1 |
| CRO_T017796 | AT2G07674 (1.00E-26) | Unknown conserved protein |
| CRO_T018129 | - | - |
| CRO_T019792 | AT4G22190 (5.00E-47) | unknown protein |
| CRO_T031918 | AT5G63380 (2.00E-97) | AMP-dependent synthetase and ligase family protein |
| CRO_T032188 | AT4G11600 (1.00E-76) | ATGPX6|glutathione peroxidase 6 |
| CRO_T032453 | AT3G55370 (6.00E-32) | OBP3|OBF-binding protein 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000407 | Oxidative phosphorylation Transcription_related, Transcription factor: C2C2-Dof proton-transporting ATP synthase complex, coupling factor F(o) hydrogen ion transmembrane transporter activity mitochondrion NADH dehydrogenase (ubiquinone) activity ATP synthesis coupled proton transport mitochondrial inner membrane | details |
| TissueCFM001101 | Transcription_related, Transcription factor: TCP pyridoxal kinase activity syntaxin binding fatty-acyl-CoA synthase activity soluble NSF attachment protein activity DNA replication origin binding nickel cation binding actin filament polymerization pyridoxal 5'-phosphate salvage pyridoxal 5'-phosphate salvage I membrane fusion Arp2/3 complex-mediated actin nucleation jasmonic acid biosynthetic process regulation of leaf development Vitamin B6 metabolism DNA replication initiation nuclear origin of replication recognition complex nitrogen compound metabolic process Arp2/3 protein complex Cell cycle jasmonic acid biosynthesis triacylglycerol degradation actin binding | details |
| TissueCFM001242 | tRNA 3'-trailer cleavage, endonucleolytic D-gluconate catabolic process protein targeting to membrane 3'-tRNA processing endoribonuclease activity gluconokinase activity vesicle docking vesicle fusion response to stimulus SNARE binding SNAP receptor activity SNARE interactions in vesicular transport | details |
| TissueCFM001356 | alpha-1,2-mannosyltransferase activity protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BBR-BPC Glycosaminoglycan degradation mannosylation N-Glycan biosynthesis ER-associated ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: HB lipid binding | details |
| TissueCFM001380 | Transcription_related, Transcription factor: BBR-BPC response to oxidative stress glutathione-peroxide redox reactions reactive oxygen species degradation L-valine degradation I methylmalonate-semialdehyde dehydrogenase (acylating) activity glutathione peroxidase activity malonate-semialdehyde dehydrogenase (acetylating) activity regulation of mitotic cell cycle Arachidonic acid metabolism regulation of cyclin-dependent protein serine/threonine kinase activity aldehyde dehydrogenase (NAD) activity Transcription_related, Transcription factor: HB Glutathione metabolism glutathione transferase activity lipid binding | details |
| TissueCFM001479 | Sulfur relay system Tropane, piperidine and pyridine alkaloid biosynthesis Transcription_related, Transcription factor: C2C2-Dof negative regulation of post-embryonic development negative regulation of reproductive process negative regulation of response to stimulus regulation of photoperiodism, flowering protein N-linked glycosylation via asparagine shoot system development gene expression RNA metabolic process dolichyl-diphosphooligosaccharide-protein glycotransferase activity tRNA modification oligosaccharyltransferase complex N-Glycan biosynthesis | details |
| TissueCFM001588 | phosphocholine phosphatase activity phosphoethanolamine phosphatase activity UDP-glucuronate decarboxylase activity asparaginase activity Vitamin B6 metabolism L-asparagine degradation I superpathway of aspartate and asparagine biosynthesis UDP-D-xylose biosynthesis Transcription_related, Transcription factor: C2C2-Dof dephosphorylation actin binding Transcription_related, Transcription factor: C2H2 Amino sugar and nucleotide sugar metabolism | details |
| TissueCFM001595 | fatty-acyl-CoA synthase activity protein farnesyltransferase activity CAAX-protein geranylgeranyltransferase activity inosine nucleosidase activity protein farnesyltransferase complex signal peptidase complex CAAX-protein geranylgeranyltransferase complex Transcription_related, Transcription factor: C2C2-Dof oxidoreductase activity Tropane, piperidine and pyridine alkaloid biosynthesis protein targeting to ER protein farnesylation inosine catabolic process protein geranylgeranylation regulation of meristem development jasmonic acid biosynthetic process signal peptide processing negative regulation of abscisic acid-activated signaling pathway adenine and adenosine salvage II guanosine nucleotides degradation I pyrimidine ribonucleosides salvage II pyrimidine salvage pathway regulation of cell shape UDP-glucosyltransferase activity adenosine nucleotides degradation I Protein export Terpenoid backbone biosynthesis jasmonic acid biosynthesis response to water deprivation peptidase activity Peroxisome membrane | details |
| TissueCFM001684 | glucose-6-phosphate isomerase activity defense response to fungus, incompatible interaction gluconeogenesis Transcription_related, Transcription factor: C2C2-Dof Transcription_related, Transcription factor: HB glycolytic process GDP-mannose biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) phosphatidylcholine acyl editing phospholipases starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) triacylglycerol degradation lipid metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |