TissueCFM001380's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: BBR-BPC | 0.004784688 | TF family |
| response to oxidative stress | 0.00602701 | GO:0006979 |
| glutathione-peroxide redox reactions | 0.011682088 | plantCyc |
| reactive oxygen species degradation | 0.011682088 | plantCyc |
| L-valine degradation I | 0.012155906 | plantCyc |
| methylmalonate-semialdehyde dehydrogenase (acylating) activity | 0.015789819 | GO:0004491 |
| glutathione peroxidase activity | 0.015789819 | GO:0004602 |
| malonate-semialdehyde dehydrogenase (acetylating) activity | 0.015789819 | GO:0018478 |
| regulation of mitotic cell cycle | 0.017338798 | GO:0007346 |
| Arachidonic acid metabolism | 0.017531418 | KEGG pathway |
| regulation of cyclin-dependent protein serine/threonine kinase activity | 0.019256224 | GO:0000079 |
| aldehyde dehydrogenase (NAD) activity | 0.028726054 | GO:0004029 |
| Transcription_related, Transcription factor: HB | 0.029661543 | TF family |
| Glutathione metabolism | 0.032743486 | KEGG pathway |
| glutathione transferase activity | 0.048291433 | GO:0004364 |
| lipid binding | 0.048291433 | GO:0008289 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000091 | AT1G02920 (2.00E-06) | ATGST11|ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11; GST11|GLUTATHIONE S-TRANSFERASE 11; GSTF7|glutathione S-transferase 7 |
| CRO_T010334 | AT1G68120 (6.00E-33) | BPC3|basic pentacysteine 3 |
| CRO_T014280 | AT5G06830 (0) | unknown protein |
| CRO_T016652 | AT1G15960 (0) | NRAMP6|NRAMP metal ion transporter 6 |
| CRO_T016724 | AT1G05230 (0) | HDG2|homeodomain GLABROUS 2 |
| CRO_T017141 | AT2G14170 (0) | ALDH6B2|aldehyde dehydrogenase 6B2 |
| CRO_T019792 | AT4G22190 (5.00E-47) | unknown protein |
| CRO_T030534 | AT2G03810 (1.00E-04) | 18S pre-ribosomal assembly protein gar2-related |
| CRO_T032187 | AT1G63460 (3.00E-61) | GPX8|glutathione peroxidase 8 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000090 | pyrazolylalanine synthase activity arylformamidase activity beta-pyrazolylalanine synthase activity L-mimosine synthase activity L-cysteine biosynthesis I tryptophan catabolic process to kynurenine cysteine synthase activity Transcription_related, Transcription factor: HB anatomical structure development single-organism developmental process cysteine biosynthetic process from serine cellular amino acid biosynthetic process regulation of cellular process drug transmembrane transport drug transmembrane transporter activity antiporter activity Carbon metabolism | details |
| TissueCFM000733 | Transcription_related, Transcription factor: BBR-BPC L-valine degradation I non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 D-gluconate catabolic process Carbon metabolism gluconokinase activity receptor activity aldehyde dehydrogenase (NAD) activity malonate-semialdehyde dehydrogenase (acetylating) activity protein phosphatase inhibitor activity pectate lyase activity abscisic acid binding methylmalonate-semialdehyde dehydrogenase (acylating) activity regulation of protein serine/threonine phosphatase activity | details |
| TissueCFM000750 | clathrin-mediated endocytosis clathrin heavy chain binding Transcription_related, Transcription factor: BBR-BPC leucopelargonidin and leucocyanidin biosynthesis phosphatidate metabolism, as a signaling molecule structural molecule activity clathrin vesicle coat Transcription_related, Transcription factor: GRAS | details |
| TissueCFM001242 | tRNA 3'-trailer cleavage, endonucleolytic D-gluconate catabolic process protein targeting to membrane 3'-tRNA processing endoribonuclease activity gluconokinase activity vesicle docking vesicle fusion response to stimulus SNARE binding SNAP receptor activity SNARE interactions in vesicular transport | details |
| TissueCFM001312 | UDP-glucuronate decarboxylase activity fatty-acyl-CoA synthase activity glutathione peroxidase activity Transcription_related, Transcription factor: C2C2-Dof Arachidonic acid metabolism glutathione-peroxide redox reactions reactive oxygen species degradation UDP-D-xylose biosynthesis jasmonic acid biosynthetic process jasmonic acid biosynthesis Amino sugar and nucleotide sugar metabolism Peroxisome | details |
| TissueCFM001354 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription regulator: SWI/SNF-BAF60b replication fork Rad51B-Rad51C-Rad51D-XRCC2 complex strand invasion regulation of cyclin-dependent protein serine/threonine kinase activity mitotic recombination regulation of mitotic cell cycle reciprocal meiotic recombination response to ionizing radiation meiotic DNA recombinase assembly Homologous recombination cellular water homeostasis water transport glycerol transport recombinase activity endodeoxyribonuclease activity four-way junction DNA binding water channel activity DNA-dependent ATPase activity glycerol channel activity single-stranded DNA binding double-stranded DNA binding ion transmembrane transport translational initiation translation initiation factor activity | details |
| TissueCFM001356 | alpha-1,2-mannosyltransferase activity protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BBR-BPC Glycosaminoglycan degradation mannosylation N-Glycan biosynthesis ER-associated ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: HB lipid binding | details |
| TissueCFM001533 | secologanin and strictosidine biosynthesis Transcription_related, Transcription factor: zf-HD L-amino acid transmembrane transporter activity polyamine transmembrane transporter activity polyamine transmembrane transport DNA binding transferase activity, transferring hexosyl groups lipid binding antiporter activity amino acid transmembrane transport Transcription_related, Transcription factor: HB Transcription_related, Transcription factor: MYB | details |
| TissueCFM001579 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription factor: NF-YC L-valine degradation I RIG-I-like receptor signaling pathway phosphoprotein binding malonate-semialdehyde dehydrogenase (acetylating) activity methylmalonate-semialdehyde dehydrogenase (acylating) activity receptor activity abscisic acid binding protein phosphatase inhibitor activity aldehyde dehydrogenase (NAD) activity glutathione metabolic process abscisic acid-activated signaling pathway RNA secondary structure unwinding regulation of protein serine/threonine phosphatase activity negative regulation of catalytic activity Glutathione metabolism | details |
| TissueCFM001664 | Other types of O-glycan biosynthesis Phagosome formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: zf-HD D-myo-inositol (1,4,5)-trisphosphate degradation cAMP-dependent protein kinase activity tubulin complex cellular response to gravity glycolysis I (from glucose 6-phosphate) response to cadmium ion phosphatidylinositol dephosphorylation microtubule-based process cell surface receptor signaling pathway | details |
| TissueCFM001772 | Vitamin B6 metabolism L-asparagine degradation I structural constituent of cell wall phosphoethanolamine phosphatase activity phosphocholine phosphatase activity asparaginase activity photorespiration superpathway of aspartate and asparagine biosynthesis pyrimidine nucleobase metabolic process pyrimidine nucleoside salvage uridine kinase activity Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase chloroplast part cytosol Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: HB lipid binding | details |
| TissueCFM001779 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I aldehyde dehydrogenase [NAD(P)+] activity 3-chloroallyl aldehyde dehydrogenase activity cellular aldehyde metabolic process regulation of mitotic cell cycle regulation of cyclin-dependent protein serine/threonine kinase activity carbohydrate transmembrane transport aldehyde dehydrogenase (NAD) activity Glycolysis / Gluconeogenesis Endocytosis transporter activity endomembrane system plastid | details |
| TissueCFM001814 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity protein phosphorylation regulation of cyclin-dependent protein serine/threonine kinase activity cellular water homeostasis regulation of mitotic cell cycle glycerol transport water transport cell surface receptor signaling pathway ion transmembrane transport Transcription_related, Transcription factor: Orphans water channel activity receptor signaling protein serine/threonine kinase activity glycerol channel activity translational initiation | details |
| TissueCFM001822 | plasmodesma Phagosome plasma membrane tubulin complex Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity cellular response to gravity regulation of mitotic cell cycle response to cadmium ion glycerol transport regulation of cyclin-dependent protein serine/threonine kinase activity animal organ development microtubule-based process cellular water homeostasis water transport cell surface receptor signaling pathway ion transmembrane transport glycerol channel activity calcium-dependent phospholipid binding water channel activity structural constituent of cytoskeleton translational initiation | details |
Expression profiles
 Show details about module gene expression profiling |