TissueCFM001319's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleic acid binding | 0.000505218 | GO:0003676 |
| Ubiquitin_Proteasome_system, E3 adaptor: DDB1 | 0.001063594 | ubs family |
| 5'-3' exoribonuclease activity | 0.006771466 | GO:0004534 |
| RIG-I-like receptor signaling pathway | 0.006824224 | KEGG pathway |
| stem cell fate determination | 0.008654064 | GO:0048867 |
| meristem maintenance | 0.008654064 | GO:0010073 |
| cellular calcium ion homeostasis | 0.008654064 | GO:0006874 |
| pollen maturation | 0.009085425 | GO:0010152 |
| cellular response to phosphate starvation | 0.011024153 | GO:0016036 |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.011024153 | GO:0090503 |
| pollen germination | 0.011024153 | GO:0009846 |
| cation transmembrane transport | 0.011024153 | GO:0098655 |
| cation-transporting ATPase activity | 0.01353693 | GO:0019829 |
| RNA secondary structure unwinding | 0.023591609 | GO:0010501 |
| mRNA splicing, via spliceosome | 0.025360372 | GO:0000398 |
| Ribosome biogenesis in eukaryotes | 0.041194722 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001480 | AT5G23630 (7.00E-62) | MIA|MALE GAMETOGENESIS IMPAIRED ANTHERS; PDR2|phosphate deficiency response 2; PDR2|PI DEFICIENCY RESPONSE 2 |
| CRO_T004553 | AT3G58510 (6.00E-76) | DEA(D/H)-box RNA helicase family protein |
| CRO_T005052 | AT1G75660 (0) | AtXRN3|5'-3' EXORIBONUCLEASE 3 |
| CRO_T007069 | AT4G17720 (4.00E-85) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T018763 | AT3G55200 (2.00E-90) | AtSAP130a|spliceosome-associated protein 130 a |
| CRO_T029635 | AT5G08500 (5.00E-82) | Transmembrane CLPTM1 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000947 | inosine-5'-phosphate biosynthesis II adenine biosynthetic process isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway maltose metabolic process isopentenyl diphosphate biosynthetic process, mevalonate pathway alpha-1,4-glucosidase activity phosphoribosylaminoimidazole carboxylase activity poly(G) binding phosphoribosylaminoimidazolesuccinocarboxamide synthase activity maltose alpha-glucosidase activity DNA topoisomerase activity 'de novo' IMP biosynthetic process root development translational elongation regulation of catalytic activity sterol metabolic process translation elongation factor activity | details |
| TissueCFM001167 | histone H3-K4 methylation histone H3-K36 methylation negative regulation of flower development Cul4-RING E3 ubiquitin ligase complex RNA degradation | details |
| TissueCFM001199 | D-myo-inositol (1,4,5)-trisphosphate degradation Transcription_related, Transcription factor: SBP Transcription_related, Transcription regulator: GNAT peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity long-day photoperiodism N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation stem cell fate determination internal protein amino acid acetylation meristem maintenance cellular calcium ion homeostasis nuclear-transcribed mRNA catabolic process, nonsense-mediated decay pollen maturation NatA complex sugar mediated signaling pathway phosphatidylinositol dephosphorylation cellular response to phosphate starvation pollen germination response to wounding nucleic acid metabolic process cellular macromolecule metabolic process cation transmembrane transport salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway cation-transporting ATPase activity | details |
| TissueCFM001265 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Transcription_related, Transcription regulator: mTERF plasma membrane respiratory chain complex I protein kinase CK2 complex aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation regulation of protein kinase activity stem cell fate determination mitochondrial electron transport, NADH to ubiquinone cellular calcium ion homeostasis meristem maintenance pollen maturation cation transmembrane transport nucleic acid metabolic process cellular response to phosphate starvation pollen germination nucleobase-containing compound metabolic process cellular macromolecule metabolic process mitochondrial respiratory chain complex I hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity protein kinase regulator activity cation-transporting ATPase activity | details |
| TissueCFM001361 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 detection of visible light vacuolar sequestering of sodium ion protein-tetrapyrrole linkage Circadian rhythm - plant photoreceptor activity red, far-red light phototransduction formation of glycosidic bonds, GlycosylTransferases: GTnc oligopeptide transport hyperosmotic salinity response signal transduction by protein phosphorylation protein-chromophore linkage phosphorelay signal transduction system phosphorelay sensor kinase activity mRNA splicing, via spliceosome | details |
| TissueCFM001627 | plasma membrane respiratory chain complex I mitochondrial electron transport, NADH to ubiquinone cellular response to nitrogen starvation intracellular distribution of mitochondria Transcription_related, Transcription regulator: DDT autophagy mitochondrial respiratory chain complex I Apelin signaling pathway aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation Transcription_related, Transcription regulator: SNF2 response to oxidative stress | details |
| TissueCFM001838 | formation of glycosidic bonds, GlycosylTransferases: GTnc 1,3-β-D-glucan biosynthesis (1->3)-beta-D-glucan biosynthetic process Ubiquitin_Proteasome_system, E2: UBC 1,3-beta-D-glucan synthase complex protein ubiquitination 1,3-beta-D-glucan synthase activity Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |