TissueCFM001323's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase | 0.001063515 | kinase family |
| mitochondrial RNA processing | 0.007329662 | GO:0000963 |
| endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.007329662 | GO:0000479 |
| mitochondrial RNA catabolic process | 0.007329662 | GO:0000957 |
| urea catabolic process | 0.008244895 | GO:0043419 |
| preribosome, small subunit precursor | 0.009107427 | GO:0030688 |
| mRNA catabolic process | 0.013187155 | GO:0006402 |
| RNA binding | 0.024189444 | GO:0003723 |
| U3 snoRNA binding | 0.024189444 | GO:0034511 |
| 3'-5'-exoribonuclease activity | 0.024189444 | GO:0000175 |
| nickel cation binding | 0.024189444 | GO:0016151 |
| polyribonucleotide nucleotidyltransferase activity | 0.024189444 | GO:0004654 |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.025617454 | GO:0090503 |
| mitochondrion | 0.044094968 | GO:0005739 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000533 | AT3G03710 (6.00E-94) | PDE326|PIGMENT DEFECTIVE 326; PNP|POLYNUCLEOTIDE PHOSPHORYLASE; RIF10|resistant to inhibition with FSM 10 |
| CRO_T002083 | AT2G34357 (0) | ARM repeat superfamily protein |
| CRO_T008063 | AT1G68990 (0) | MGP3|male gametophyte defective 3 |
| CRO_T008755 | AT4G26600 (0) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T011591 | AT5G13270 (2.00E-76) | RARE1|REQUIRED FOR ACCD RNA EDITING 1 |
| CRO_T017011 | AT3G46630 (2.00E-04) | Protein of unknown function (DUF3223) |
| CRO_T017434 | AT1G42440 (3.00E-124) | unknown protein |
| CRO_T028793 | AT5G08160 (1.00E-89) | ATPK3|serine/threonine protein kinase 3 |
| CRO_T032241 | AT4G38860 (5.00E-21) | SAUR16|SMALL AUXIN UPREGULATED RNA 16 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000948 | inosine-5'-phosphate biosynthesis II RNA transport phosphoribosylaminoimidazolesuccinocarboxamide synthase activity maltose alpha-glucosidase activity alpha-1,4-glucosidase activity poly(G) binding phosphoribosylaminoimidazole carboxylase activity isopentenyl diphosphate biosynthetic process, mevalonate pathway adenine biosynthetic process maltose metabolic process isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RNA binding 'de novo' IMP biosynthetic process regulation of catalytic activity root development formation of translation preinitiation complex sterol metabolic process translational elongation regulation of translational initiation rRNA processing N-Glycan biosynthesis eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex proteasome complex eukaryotic 48S preinitiation complex | details |
| TissueCFM001159 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase small-subunit processome preribosome, small subunit precursor Ino80 complex endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA-directed RNA polymerase III complex transcription from RNA polymerase III promoter | details |
| TissueCFM001265 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Transcription_related, Transcription regulator: mTERF plasma membrane respiratory chain complex I protein kinase CK2 complex aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation regulation of protein kinase activity stem cell fate determination mitochondrial electron transport, NADH to ubiquinone cellular calcium ion homeostasis meristem maintenance pollen maturation cation transmembrane transport nucleic acid metabolic process cellular response to phosphate starvation pollen germination nucleobase-containing compound metabolic process cellular macromolecule metabolic process mitochondrial respiratory chain complex I hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity protein kinase regulator activity cation-transporting ATPase activity | details |
| TissueCFM001511 | formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase plasma membrane respiratory chain complex I mitochondrial respiratory chain complex I mitochondrial electron transport, NADH to ubiquinone aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation 2 iron, 2 sulfur cluster binding zinc ion binding response to oxidative stress NADH dehydrogenase (ubiquinone) activity | details |
| TissueCFM001666 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Spliceosome beta-galactosidase activity | details |
| TissueCFM001701 | primary miRNA binding pre-miRNA binding tRNA (cytosine-5-)-methyltransferase activity exocyst assembly Golgi to plasma membrane transport generation of catalytic spliceosome for first transesterification step production of miRNAs involved in gene silencing by miRNA isoleucyl-tRNA aminoacylation isoleucine-tRNA ligase activity aminoacyl-tRNA editing activity inorganic diphosphatase activity production of siRNA involved in RNA interference phosphate-containing compound metabolic process regulation of translational fidelity tRNA methylation phloem or xylem histogenesis catalytic step 1 spliceosome prespliceosome post-mRNA release spliceosomal complex Prp19 complex mRNA processing exocyst catalytic step 2 spliceosome response to auxin | details |
| TissueCFM001794 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) preribosome, small subunit precursor Ino80 complex Ubiquitin_Proteasome_system, DUB: USP transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex U3 snoRNA binding Purine metabolism ribonucleoside binding RNA polymerase III activity maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |