TissueCFM001666's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase | 0.002127502 | kinase family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.005312472 | cazy family |
| Spliceosome | 0.029426413 | KEGG pathway |
| beta-galactosidase activity | 0.040433811 | GO:0004565 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012549 | - | - |
| CRO_T015984 | AT1G31740 (0) | BGAL15|beta-galactosidase 15 |
| CRO_T023457 | AT2G27100 (2.00E-175) | SE|SERRATE |
| CRO_T028697 | AT3G19840 (3.00E-155) | ATPRP40C|pre-mRNA-processing protein 40C |
| CRO_T028793 | AT5G08160 (1.00E-89) | ATPK3|serine/threonine protein kinase 3 |
| CRO_T031800 | AT5G61340 (3.00E-06) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001159 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase small-subunit processome preribosome, small subunit precursor Ino80 complex endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA-directed RNA polymerase III complex transcription from RNA polymerase III promoter | details |
| TissueCFM001262 | ascorbate glutathione cycle L-ascorbate degradation V Transcription_related, Transcription factor: FAR1 magnesium ion transmembrane transporter activity L-ascorbate peroxidase activity translation initiation factor binding regulation of translational initiation magnesium ion transmembrane transport formation of translation preinitiation complex magnesium ion transport eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex Ascorbate and aldarate metabolism transferase activity, transferring acyl groups translation initiation factor activity | details |
| TissueCFM001265 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Transcription_related, Transcription regulator: mTERF plasma membrane respiratory chain complex I protein kinase CK2 complex aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation regulation of protein kinase activity stem cell fate determination mitochondrial electron transport, NADH to ubiquinone cellular calcium ion homeostasis meristem maintenance pollen maturation cation transmembrane transport nucleic acid metabolic process cellular response to phosphate starvation pollen germination nucleobase-containing compound metabolic process cellular macromolecule metabolic process mitochondrial respiratory chain complex I hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity protein kinase regulator activity cation-transporting ATPase activity | details |
| TissueCFM001323 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase mitochondrial RNA processing endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) mitochondrial RNA catabolic process urea catabolic process preribosome, small subunit precursor mRNA catabolic process RNA binding U3 snoRNA binding 3'-5'-exoribonuclease activity nickel cation binding polyribonucleotide nucleotidyltransferase activity RNA phosphodiester bond hydrolysis, exonucleolytic mitochondrion | details |
| TissueCFM001511 | formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase plasma membrane respiratory chain complex I mitochondrial respiratory chain complex I mitochondrial electron transport, NADH to ubiquinone aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation 2 iron, 2 sulfur cluster binding zinc ion binding response to oxidative stress NADH dehydrogenase (ubiquinone) activity | details |
| TissueCFM001667 | response to stimulus protein tyrosine phosphatase activity electron carrier activity | details |
| TissueCFM001784 | Ubiquitin_Proteasome_system, DUB: USP glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity glycolytic process glucose metabolic process organic substance metabolic process cellular metabolic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) | details |
| TissueCFM001794 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) preribosome, small subunit precursor Ino80 complex Ubiquitin_Proteasome_system, DUB: USP transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex U3 snoRNA binding Purine metabolism ribonucleoside binding RNA polymerase III activity maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |