TissueCFM001353's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| post-embryonic root development | 0.000620531 | GO:0048528 |
| MAPK signaling pathway - yeast | 0.003099354 | KEGG pathway |
| protein domain specific binding | 0.00805975 | GO:0019904 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001271 | AT1G43760 (1.00E-25) | DNAse I-like superfamily protein |
| CRO_T004238 | - | - |
| CRO_T015211 | - | - |
| CRO_T017108 | - | - |
| CRO_T023236 | AT1G78220 (3.00E-67) | GF14 PI|GF 14 PI CHAIN; GRF13|general regulatory factor 13 |
| CRO_T025070 | - | - |
| CRO_T032244 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000029 | details | |
| TissueCFM000030 | details | |
| TissueCFM000047 | post-embryonic root development Human papillomavirus infection MAPK signaling pathway - yeast Pyruvate metabolism | details |
| TissueCFM000066 | post-embryonic root development protein domain specific binding MAPK signaling pathway - yeast Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: HB | details |
| TissueCFM000068 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000094 | post-embryonic root development MAPK signaling pathway - yeast hydrogen ion transmembrane transporter activity protein domain specific binding ATP synthesis coupled proton transport | details |
| TissueCFM000102 | post-embryonic root development Ubiquitin_Proteasome_system, DUB: ULP | details |
| TissueCFM000109 | details | |
| TissueCFM000129 | post-embryonic root development MAPK signaling pathway - yeast Propanoate metabolism protein domain specific binding Transcription_related, Transcription factor: FAR1 | details |
| TissueCFM000143 | adenine and adenosine salvage II | details |
| TissueCFM000202 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000230 | clathrin vesicle coat | details |
| TissueCFM000266 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000307 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 glycogen biosynthetic process response to nitrate post-embryonic root development nitrate transport MAPK signaling pathway - yeast protein domain specific binding cation binding 1,4-alpha-glucan branching enzyme activity nitrate transmembrane transporter activity pectate lyase activity | details |
| TissueCFM000317 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000327 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000362 | post-embryonic root development Transcription_related, Transcription regulator: ARID MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000368 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000383 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000440 | post-embryonic root development DNA recombination MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000445 | Mannose type O-glycan biosyntheis post-embryonic root development hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc MAPK signaling pathway - yeast | details |
| TissueCFM000447 | post-embryonic root development arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) ornithine carbamoyltransferase activity L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle ribosome biogenesis | details |
| TissueCFM000448 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000483 | MAPK signaling pathway - yeast post-embryonic root development protein domain specific binding | details |
| TissueCFM000496 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000513 | details | |
| TissueCFM000536 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM000586 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000587 | details | |
| TissueCFM000592 | post-embryonic root development protein domain specific binding MAPK signaling pathway - yeast MAPK signaling pathway - plant | details |
| TissueCFM000598 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000603 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000620 | Transcription_related, Transcription factor: Alfin-like Transcription_related, Transcription factor: PLATZ regulation of embryonic development glycyl-tRNA aminoacylation mitochondrial electron transport, ubiquinol to cytochrome c | details |
| TissueCFM000625 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000640 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000653 | post-embryonic root development DNA recombination MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000667 | post-embryonic root development arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) ornithine carbamoyltransferase activity L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle | details |
| TissueCFM000745 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000752 | post-embryonic root development ribosome biogenesis Autophagy - animal MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000753 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000771 | Transcription_related, Transcription factor: Alfin-like post-embryonic root development MAPK signaling pathway - yeast PI3K-Akt signaling pathway Transcription_related, Transcription factor: M-type | details |
| TissueCFM000796 | details | |
| TissueCFM000812 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000833 | cellular process | details |
| TissueCFM000903 | post-embryonic root development MAPK signaling pathway - yeast Propanoate metabolism protein domain specific binding calcium ion binding | details |
| TissueCFM000932 | Protein export protein transport | details |
| TissueCFM001010 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001075 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM001120 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM001214 | nucleic acid metabolic process | details |
| TissueCFM001236 | details | |
| TissueCFM001261 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM001289 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001290 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001303 | lipid biosynthetic process farnesyl-diphosphate farnesyltransferase activity squalene synthase activity Steroid biosynthesis | details |
| TissueCFM001348 | intracellular membrane-bounded organelle | details |
| TissueCFM001352 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001433 | DNA metabolic process binding | details |
| TissueCFM001474 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001562 | details |
Expression profiles
 Show details about module gene expression profiling |