TissueCFM001450's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Mitophagy - yeast | 0.001772133 | KEGG pathway |
| Transcription_related, Transcription regulator: IWS1 | 0.004253747 | TF family |
| ribosomal protein import into nucleus | 0.009632807 | GO:0006610 |
| protein import into nucleus, docking | 0.009632807 | GO:0000059 |
| transcription elongation from RNA polymerase II promoter | 0.009632807 | GO:0006368 |
| protein import into nucleus, translocation | 0.009632807 | GO:0000060 |
| Transcription_related, Transcription factor: Orphans | 0.011931004 | TF family |
| NLS-bearing protein import into nucleus | 0.012324528 | GO:0006607 |
| vesicle docking | 0.013474974 | GO:0048278 |
| nuclear periphery | 0.014127074 | GO:0034399 |
| nuclear membrane | 0.014127074 | GO:0031965 |
| elongin complex | 0.014127074 | GO:0070449 |
| nuclear localization sequence binding | 0.017533747 | GO:0008139 |
| exocytosis | 0.021421451 | GO:0006887 |
| exocyst | 0.023094835 | GO:0000145 |
| protein transporter activity | 0.024778988 | GO:0008565 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003386 | AT5G12370 (6.00E-111) | SEC10|exocyst complex component sec10 |
| CRO_T007849 | AT2G16950 (0) | ATTRN1|TRANSPORTIN 1 |
| CRO_T015518 | AT5G65290 (2.00E-133) | LMBR1-like membrane protein |
| CRO_T019050 | AT3G48050 (0) | SUO|'shuttle' in chinese |
| CRO_T020187 | AT3G46220 (6.00E-98) | unknown protein |
| CRO_T028010 | AT1G24190 (0) | ATSIN3|SIN3 HOMOLOG; SNL3|SIN3-like 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000516 | Mitophagy - yeast Wnt signaling pathway SMN-Sm protein complex U4 snRNP commitment complex pICln-Sm protein complex spliceosomal tri-snRNP complex regulation of transcription, DNA-templated histone acetylation spliceosomal complex assembly spliceosomal snRNP assembly U5 snRNP U12-type spliceosomal complex prespliceosome U1 snRNP U2 snRNP Transcription_related, Transcription factor: Orphans Transcription_related, Transcription factor: TCP Transcription_related, Transcription regulator: PHD precatalytic spliceosome transcription cofactor activity histone acetyltransferase activity catalytic step 2 spliceosome | details |
| TissueCFM001659 | signal transduction MAPK signaling pathway - fly protein import into nucleus vesicle docking regulation of protein phosphatase type 2A activity protein phosphatase type 2A regulator activity Ran GTPase binding exocytosis mRNA surveillance pathway nuclear envelope protein phosphatase type 2A complex exocyst cytosol protein transporter activity cell cell redox homeostasis | details |
| TissueCFM001660 | protein transporter activity rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II hydroxyphenylpyruvate reductase activity 4-hydroxybenzoate biosynthesis I (eukaryotes) signal transduction oxidative photosynthetic carbon pathway glyoxylate reductase (NADP) activity hydroxypyruvate reductase activity protein phosphatase type 2A regulator activity protein import into nucleus, docking protein import into nucleus, translocation ribosomal protein import into nucleus regulation of protein phosphatase type 2A activity nuclear localization sequence binding Ran GTPase binding MAPK signaling pathway - fly NLS-bearing protein import into nucleus nuclear periphery protein phosphatase type 2A complex clathrin adaptor complex nuclear membrane nuclear envelope protein import into nucleus | details |
| TissueCFM001672 | protein transporter activity Ubiquitin_Proteasome_system, E3 adaptor: Cullin vesicle-mediated transport MAPK signaling pathway - fly ribosomal protein import into nucleus protein import into nucleus, translocation protein import into nucleus, docking vacuolar transport intracellular transport NLS-bearing protein import into nucleus nuclear localization sequence binding Ran GTPase binding protein import into nucleus nuclear envelope nuclear periphery Golgi apparatus part nuclear membrane cullin-RING ubiquitin ligase complex clathrin adaptor complex ubiquitin protein ligase binding Peroxisome protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity | details |
| TissueCFM001788 | protein transporter activity protein import into nucleus, translocation ribosomal protein import into nucleus protein import into nucleus, docking nuclear localization sequence binding Ran GTPase binding NLS-bearing protein import into nucleus clathrin adaptor complex nuclear periphery nuclear membrane vesicle-mediated transport intracellular protein transport MAPK signaling pathway - fly protein import into nucleus nuclear envelope Lysosome plastoglobule signal transduction Endocytosis | details |
Expression profiles
 Show details about module gene expression profiling |