TissueCFM001495's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| defense response to virus | 0.009652115 | GO:0051607 |
| nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 0.009652115 | GO:0000184 |
| ribonuclease P activity | 0.010720611 | GO:0004526 |
| gene silencing by RNA | 0.010721403 | GO:0031047 |
| anaphase-promoting complex | 0.015410214 | GO:0005680 |
| nucleolar ribonuclease P complex | 0.015410214 | GO:0005655 |
| 90S preribosome | 0.015410214 | GO:0030686 |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.021192334 | GO:0090502 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.021192334 | GO:0000462 |
| mRNA surveillance pathway | 0.024570135 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.024570135 | KEGG pathway |
| DNA repair | 0.034703261 | GO:0006281 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.042670298 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006066 | AT1G79540 (1.00E-40) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T006267 | AT5G23570 (6.00E-137) | ATSGS3|SUPPRESSOR OF GENE SILENCING 3 |
| CRO_T012951 | AT1G50030 (1.00E-29) | TOR|target of rapamycin |
| CRO_T012996 | AT5G05560 (6.00E-27) | APC1|anaphase promoting complex 1; EMB2771|EMBRYO DEFECTIVE 2771 |
| CRO_T024644 | AT5G36722 (3.00E-09) | unknown protein |
| CRO_T026101 | AT3G15810 (3.00E-14) | Protein of unknown function (DUF567) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001135 | formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001159 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase small-subunit processome preribosome, small subunit precursor Ino80 complex endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA-directed RNA polymerase III complex transcription from RNA polymerase III promoter | details |
| TissueCFM001326 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BBR-BPC regulation of biological process folic acid-containing compound biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |