TissueCFM001326's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002148029 | cazy family |
| Transcription_related, Transcription factor: BBR-BPC | 0.002148029 | TF family |
| regulation of biological process | 0.004250857 | GO:0050789 |
| folic acid-containing compound biosynthetic process | 0.004250857 | GO:0009396 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006066 | AT1G79540 (1.00E-40) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T008090 | - | - |
| CRO_T009780 | AT3G33520 (2.00E-127) | ARP6|actin-related protein 6; ESD1|EARLY IN SHORT DAYS 1; SUF3|SUPPRESSOR OF FRI 3 |
| CRO_T016787 | AT5G24740 (2.00E-27) | SHBY|SHRUBBY |
| CRO_T025085 | AT5G61990 (5.00E-55) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T027650 | AT5G24740 (8.00E-91) | SHBY|SHRUBBY |
| CRO_T029282 | AT1G14685 (2.00E-78) | ATBPC2|BASIC PENTACYSTEINE 2 |
| CRO_T030144 | AT5G56310 (1.00E-74) | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000055 | molybdenum cofactor biosynthesis | details |
| TissueCFM000075 | methylerythritol phosphate pathway II methylerythritol phosphate pathway I Terpenoid backbone biosynthesis secologanin and strictosidine biosynthesis terpenoid biosynthetic process isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway oxidation-reduction process monoterpenoid biosynthetic process geraniol and geranial biosynthesis acetaldehyde biosynthesis I pyruvate fermentation to ethanol II Transcription_related, Transcription factor: bHLH heme binding iron ion binding (3S)-linalool biosynthesis formaldehyde oxidation II (glutathione-dependent) geranyl diphosphate biosynthesis isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process steroid hormone mediated signaling pathway geranyl diphosphate metabolic process | details |
| TissueCFM000127 | Transcription_related, Transcription factor: BBR-BPC integral component of lumenal side of endoplasmic reticulum membrane Golgi-associated vesicle membrane integral component of cytoplasmic side of endoplasmic reticulum membrane lysosomal membrane ribonucleoside-diphosphate reductase complex membrane protein proteolysis signal peptide processing pollen germination deoxyribonucleotide biosynthetic process aspartic endopeptidase activity, intramembrane cleaving ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | details |
| TissueCFM000576 | Transcription_related, Transcription factor: BBR-BPC | details |
| TissueCFM000683 | Transcription_related, Transcription factor: BBR-BPC | details |
| TissueCFM000839 | details | |
| TissueCFM001085 | ceramide degradation Transcription_related, Transcription factor: BBR-BPC peptide-serine-N-acetyltransferase activity D-erythro-sphingosine kinase activity peptide-glutamate-N-acetyltransferase activity positive regulation of histone methylation N-terminal peptidyl-glutamic acid acetylation N-terminal peptidyl-serine acetylation internal protein amino acid acetylation NatA complex sphingolipid biosynthesis (plants) sphingolipid biosynthetic process regulation of RNA metabolic process Transcription_related, Transcription regulator: GNAT system development regulation of shoot system development cytosolic ribosome clathrin adaptor complex phospholipid-translocating ATPase activity phospholipid translocation regulation of gene expression Endocytosis plasma membrane response to stimulus single-organism cellular process protein transporter activity | details |
| TissueCFM001135 | formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001250 | Aminoacyl-tRNA biosynthesis Alzheimer's disease Transcription_related, Transcription factor: BBR-BPC mitochondrial alanyl-tRNA aminoacylation isoleucyl-tRNA aminoacylation peptide catabolic process regulation of translational fidelity Cul3-RING ubiquitin ligase complex alanine-tRNA ligase activity isoleucine-tRNA ligase activity mitochondrion cytosol aminoacyl-tRNA editing activity tRNA binding tRNA modification protein processing zinc ion binding metalloendopeptidase activity amino acid binding proteolysis involved in cellular protein catabolic process | details |
| TissueCFM001495 | defense response to virus nuclear-transcribed mRNA catabolic process, nonsense-mediated decay ribonuclease P activity gene silencing by RNA anaphase-promoting complex nucleolar ribonuclease P complex 90S preribosome RNA phosphodiester bond hydrolysis, endonucleolytic maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) mRNA surveillance pathway Ubiquitin mediated proteolysis DNA repair formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001510 | cellular response to stress positive regulation of kinase activity UDP-glucosylation glucan 1,4-alpha-maltotetraohydrolase activity UDP-glucose:glycoprotein glucosyltransferase activity regulation of translation formation of glycosidic bonds, GlycosylTransferases: GTnc alpha-amylase activity regulation of protein kinase activity Transcription_related, Transcription factor: BBR-BPC protein kinase regulator activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc protein kinase binding ribosome binding protein glycosylation Transcription_related, Transcription regulator: SNF2 RNA degradation | details |
| TissueCFM001597 | myosin complex motor activity actin binding | details |
Expression profiles
 Show details about module gene expression profiling |