TissueCFM001544's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pollen germination | 0.00018175 | GO:0009846 |
| 3-phosphoinositide biosynthesis | 0.007424615 | plantCyc |
| phosphatidylinositol 3-kinase complex, class III, type II | 0.007721486 | GO:0034272 |
| phosphatidylinositol 3-kinase complex, class III, type I | 0.007721486 | GO:0034271 |
| eukaryotic translation initiation factor 3 complex, eIF3m | 0.007721486 | GO:0071541 |
| nucleus-vacuole junction | 0.007721486 | GO:0071561 |
| macroautophagy | 0.008551272 | GO:0016236 |
| pexophagy | 0.008551272 | GO:0030242 |
| Protein_kinases_phosphatases, PPC:4.1.1: MAP3K | 0.012054112 | kinase family |
| Ubiquitin_Proteasome_system, DUB: JAMM | 0.012054112 | ubs family |
| late endosome | 0.012351092 | GO:0005770 |
| late endosome to vacuole transport | 0.012823497 | GO:0045324 |
| Apelin signaling pathway | 0.014246921 | KEGG pathway |
| integral component of Golgi membrane | 0.015434758 | GO:0030173 |
| formation of translation preinitiation complex | 0.028436092 | GO:0001731 |
| protein targeting to vacuole | 0.028436092 | GO:0006623 |
| signal transduction by protein phosphorylation | 0.028436092 | GO:0023014 |
| regulation of translational initiation | 0.028436092 | GO:0006446 |
| intra-Golgi vesicle-mediated transport | 0.028436092 | GO:0006891 |
| Transcription_related, Transcription factor: C3H | 0.029178417 | TF family |
| receptor signaling protein serine/threonine kinase activity | 0.031450901 | GO:0004702 |
| translation initiation factor binding | 0.031450901 | GO:0031369 |
| nuclear pore | 0.033767533 | GO:0005643 |
| pollen development | 0.034942306 | GO:0009555 |
| eukaryotic 43S preinitiation complex | 0.035373719 | GO:0016282 |
| eukaryotic 48S preinitiation complex | 0.035373719 | GO:0033290 |
| RNA transport | 0.046843872 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008182 | AT2G39990 (5.00E-106) | AteIF3f|eukaryotic translation initiation factor 3 subunit F; EIF2|eukaryotic translation initiation factor 2 |
| CRO_T020775 | AT1G63700 (3.00E-115) | EMB71|EMBRYO DEFECTIVE 71; MAPKKK4|MAP KINASE KINASE KINASE 4; YDA|YODA |
| CRO_T020965 | - | - |
| CRO_T021394 | - | - |
| CRO_T021772 | AT3G18480 (4.00E-172) | AtCASP|CCAAT-displacement protein alternatively spliced product |
| CRO_T025379 | AT2G17970 (2.00E-123) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T027883 | AT1G16800 (1.00E-151) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001058 | AMPK signaling pathway diacylglycerol and triacylglycerol biosynthesis galacturan 1,4-alpha-galacturonidase activity core promoter sequence-specific DNA binding long-chain-alcohol O-fatty-acyltransferase activity diacylglycerol O-acyltransferase activity transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding transcription from RNA polymerase II promoter positive regulation of transcription from RNA polymerase II promoter triglyceride biosynthetic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription factor: bHLH polygalacturonase activity lyase activity | details |
| TissueCFM001566 | ubiquitin protein ligase activity proteasome-mediated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, DUB: JAMM Ubiquitin_Proteasome_system, E3: RING TBP-class protein binding protein histidine kinase binding translation initiation factor binding proteasome-activating ATPase activity cellular response to sucrose stimulus secondary growth negative regulation of iron ion transport regulation of chlorophyll catabolic process cellular response to cold cellular response to abscisic acid stimulus regulation of meristem development Transcription_related, Transcription factor: Orphans phosphorelay sensor kinase activity leaf senescence regulation of seed germination positive regulation of RNA polymerase II transcriptional preinitiation complex assembly response to osmotic stress cellular response to phosphate starvation peptidyl-histidine phosphorylation pollen germination phloem or xylem histogenesis regulation of flower development zinc ion binding ER-associated ubiquitin-dependent protein catabolic process eukaryotic translation initiation factor 3 complex, eIF3m cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex signal transduction by protein phosphorylation regulation of translational initiation formation of translation preinitiation complex protein polyubiquitination phosphorelay signal transduction system eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex defense response to bacterium protein ubiquitination involved in ubiquitin-dependent protein catabolic process translation initiation factor activity | details |
| TissueCFM001570 | eukaryotic translation initiation factor 3 complex, eIF3m cytosol Ubiquitin_Proteasome_system, DUB: JAMM Ubiquitin_Proteasome_system, E3: HECT nucleus phospholipid catabolic process Transcription_related, Transcription factor: C3H O-acyltransferase activity translation initiation factor binding phospholipase activity detoxification of reactive carbonyls in chloroplasts phosphatidylcholine acyl editing phospholipases traumatin and (Z)-3-hexen-1-yl acetate biosynthesis single-organism developmental process pollen germination eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex regulation of translational initiation formation of translation preinitiation complex protein ubiquitination involved in ubiquitin-dependent protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |