TissueCFM001570's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| eukaryotic translation initiation factor 3 complex, eIF3m | 0.007239408 | GO:0071541 |
| cytosol | 0.007239408 | GO:0005829 |
| Ubiquitin_Proteasome_system, DUB: JAMM | 0.010224243 | ubs family |
| Ubiquitin_Proteasome_system, E3: HECT | 0.010224243 | ubs family |
| nucleus | 0.013704367 | GO:0005634 |
| phospholipid catabolic process | 0.017344948 | GO:0009395 |
| Transcription_related, Transcription factor: C3H | 0.024721997 | TF family |
| O-acyltransferase activity | 0.025024216 | GO:0008374 |
| translation initiation factor binding | 0.025024216 | GO:0031369 |
| phospholipase activity | 0.025024216 | GO:0004620 |
| detoxification of reactive carbonyls in chloroplasts | 0.025353913 | plantCyc |
| phosphatidylcholine acyl editing | 0.025353913 | plantCyc |
| phospholipases | 0.025353913 | plantCyc |
| traumatin and (Z)-3-hexen-1-yl acetate biosynthesis | 0.025353913 | plantCyc |
| single-organism developmental process | 0.028867271 | GO:0044767 |
| pollen germination | 0.028867271 | GO:0009846 |
| eukaryotic 43S preinitiation complex | 0.029824028 | GO:0016282 |
| eukaryotic 48S preinitiation complex | 0.029824028 | GO:0033290 |
| regulation of translational initiation | 0.034579377 | GO:0006446 |
| formation of translation preinitiation complex | 0.034579377 | GO:0001731 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.046960851 | GO:0042787 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001725 | AT4G10710 (0) | SPT16|global transcription factor C |
| CRO_T006229 | AT4G19860 (1.00E-59) | alpha/beta-Hydrolases superfamily protein |
| CRO_T008182 | AT2G39990 (5.00E-106) | AteIF3f|eukaryotic translation initiation factor 3 subunit F; EIF2|eukaryotic translation initiation factor 2 |
| CRO_T009930 | - | - |
| CRO_T011116 | AT1G01355 (1.00E-09) | Putative endonuclease or glycosyl hydrolase |
| CRO_T020965 | - | - |
| CRO_T021370 | - | - |
| CRO_T023435 | AT2G21260 (2.00E-49) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T027883 | AT1G16800 (1.00E-151) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001058 | AMPK signaling pathway diacylglycerol and triacylglycerol biosynthesis galacturan 1,4-alpha-galacturonidase activity core promoter sequence-specific DNA binding long-chain-alcohol O-fatty-acyltransferase activity diacylglycerol O-acyltransferase activity transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding transcription from RNA polymerase II promoter positive regulation of transcription from RNA polymerase II promoter triglyceride biosynthetic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription factor: bHLH polygalacturonase activity lyase activity | details |
| TissueCFM001201 | Ubiquitin_Proteasome_system, E3: HECT intralumenal vesicle formation phospholipid catabolic process multivesicular body assembly nucleotide-sugar metabolic process dTDP-glucose 4,6-dehydratase activity UDP-glucose 4,6-dehydratase activity UDP-L-rhamnose biosynthesis phospholipase activity O-acyltransferase activity ubiquitin binding late endosome membrane phosphatidylcholine acyl editing phospholipases protein ubiquitination involved in ubiquitin-dependent protein catabolic process Amino sugar and nucleotide sugar metabolism Ubiquitin mediated proteolysis | details |
| TissueCFM001544 | pollen germination 3-phosphoinositide biosynthesis phosphatidylinositol 3-kinase complex, class III, type II phosphatidylinositol 3-kinase complex, class III, type I eukaryotic translation initiation factor 3 complex, eIF3m nucleus-vacuole junction macroautophagy pexophagy Protein_kinases_phosphatases, PPC:4.1.1: MAP3K Ubiquitin_Proteasome_system, DUB: JAMM late endosome late endosome to vacuole transport Apelin signaling pathway integral component of Golgi membrane formation of translation preinitiation complex protein targeting to vacuole signal transduction by protein phosphorylation regulation of translational initiation intra-Golgi vesicle-mediated transport Transcription_related, Transcription factor: C3H receptor signaling protein serine/threonine kinase activity translation initiation factor binding nuclear pore pollen development eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex RNA transport | details |
| TissueCFM001566 | ubiquitin protein ligase activity proteasome-mediated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, DUB: JAMM Ubiquitin_Proteasome_system, E3: RING TBP-class protein binding protein histidine kinase binding translation initiation factor binding proteasome-activating ATPase activity cellular response to sucrose stimulus secondary growth negative regulation of iron ion transport regulation of chlorophyll catabolic process cellular response to cold cellular response to abscisic acid stimulus regulation of meristem development Transcription_related, Transcription factor: Orphans phosphorelay sensor kinase activity leaf senescence regulation of seed germination positive regulation of RNA polymerase II transcriptional preinitiation complex assembly response to osmotic stress cellular response to phosphate starvation peptidyl-histidine phosphorylation pollen germination phloem or xylem histogenesis regulation of flower development zinc ion binding ER-associated ubiquitin-dependent protein catabolic process eukaryotic translation initiation factor 3 complex, eIF3m cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex signal transduction by protein phosphorylation regulation of translational initiation formation of translation preinitiation complex protein polyubiquitination phosphorelay signal transduction system eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex defense response to bacterium protein ubiquitination involved in ubiquitin-dependent protein catabolic process translation initiation factor activity | details |
| TissueCFM001730 | intrinsic component of membrane Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) single-organism developmental process protein catabolic process aspartic-type endopeptidase activity ubiquitin protein ligase binding | details |
| TissueCFM001764 | Lipopolysaccharide biosynthesis CMP-3-deoxy-D-manno-octulosonate biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation intracellular ribonucleoprotein complex | details |
| TissueCFM001780 | Transcription_related, Transcription regulator: IWS1 ruffle membrane detoxification of reactive carbonyls in chloroplasts L-lysine biosynthesis VI traumatin and (Z)-3-hexen-1-yl acetate biosynthesis L,L-diaminopimelate aminotransferase activity regulation of ruffle assembly systemic acquired resistance, salicylic acid mediated signaling pathway lysine biosynthetic process via diaminopimelate response to starvation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc response to cytokinin Biosynthesis of amino acids Starch and sucrose metabolism phosphatidylinositol binding | details |
| TissueCFM001846 | fatty acid elongation -- saturated stearate biosynthesis II (bacteria and plants) Fatty acid metabolism palmitate biosynthesis II (bacteria and plants) regulation of cell differentiation regulation of RNA splicing phospholipid catabolic process PI3K-Akt signaling pathway hydro-lyase activity phospholipase activity O-acyltransferase activity mRNA processing octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) phosphatidylcholine acyl editing phospholipases fatty acid biosynthetic process cytoplasmic mRNA processing body | details |
Expression profiles
 Show details about module gene expression profiling |