TissueCFM001552's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| baicalein degradation (hydrogen peroxide detoxification) | 0.001595037 | plantCyc |
| Hippo signaling pathway | 0.001595745 | KEGG pathway |
| Phenylpropanoid biosynthesis | 0.036859141 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007072 | AT1G72510 (1.00E-42) | Protein of unknown function (DUF1677) |
| CRO_T009324 | AT5G14450 (8.00E-42) | GDSL-like Lipase/Acylhydrolase superfamily protein |
| CRO_T024140 | AT3G22190 (1.00E-33) | IQD5|IQ-domain 5 |
| CRO_T028805 | AT1G52810 (4.00E-25) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T029606 | AT4G19045 (6.00E-114) | Mob1/phocein family protein |
| CRO_T033039 | AT1G05260 (7.00E-77) | RCI3|RARE COLD INDUCIBLE GENE 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000260 | positive regulation of mitochondrial translation nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair, DNA incision, 5'-to lesion modulation by symbiont of host calcium or calmodulin-mediated signal transduction copper ion transmembrane transport mitochondrial respiratory chain complex IV assembly resolution of meiotic recombination intermediates Hippo signaling pathway Mineral absorption Nucleotide excision repair nucleotide-excision repair factor 1 complex protein sumoylation double-strand break repair via homologous recombination protein tag copper ion transmembrane transporter activity single-stranded DNA endodeoxyribonuclease activity prefoldin complex integral component of mitochondrial inner membrane Ras signaling pathway | details |
| TissueCFM001117 | Transcription_related, Transcription factor: WRKY cellular transition metal ion homeostasis metal ion transport baicalein degradation (hydrogen peroxide detoxification) transition metal ion binding intracellular signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase glycolipid metabolic process cytoplasm Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase glucosyltransferase activity Phenylpropanoid biosynthesis transcription factor activity, sequence-specific DNA binding | details |
| TissueCFM001516 | chromoplast carotenoid biosynthetic process trans-lycopene biosynthesis II (plants) Carotenoid biosynthesis Cytochrome_P450, Cytochrome P450: CYP701A oxidation-reduction process ent-kaurene oxidation to kaurenoic acid ent-kaurene oxidase activity ent-kaur-16-en-19-ol oxidase activity ent-kaur-16-en-19-al oxidase activity 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity carotene 7,8-desaturase activity PSII associated light-harvesting complex II catabolic process 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene gibberellin biosynthetic process chloroplast envelope Mitophagy - yeast Propanoate metabolism neurosporene biosynthesis cinnamoyl-CoA reductase activity 9,9'-dicis-carotene:quinone oxidoreductase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity 2-oxoisovalerate decarboxylation to isobutanoyl-CoA GA12 biosynthesis Diterpenoid biosynthesis chloroplast outer membrane Phenylpropanoid biosynthesis ATP-dependent peptidase activity metalloendopeptidase activity coenzyme binding | details |
| TissueCFM001634 | baicalein degradation (hydrogen peroxide detoxification) formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase glucosyltransferase activity glycolipid metabolic process Phenylpropanoid biosynthesis calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity peptidyl-serine phosphorylation hydrogen peroxide catabolic process protein autophosphorylation abscisic acid-activated signaling pathway | details |
| TissueCFM001674 | formation of glycosidic bonds, GlycosylTransferases: GTnc γ-glutamyl cycle sphingomyelin phosphodiesterase D activity potassium ion transmembrane transport acetylglucosaminyltransferase activity potassium ion transmembrane transporter activity integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |