TissueCFM001117's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: WRKY | 0.001332059 | TF family |
| cellular transition metal ion homeostasis | 0.001869208 | GO:0046916 |
| metal ion transport | 0.001869208 | GO:0030001 |
| baicalein degradation (hydrogen peroxide detoxification) | 0.002922076 | plantCyc |
| transition metal ion binding | 0.003561027 | GO:0046914 |
| intracellular signal transduction | 0.005747368 | GO:0035556 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.011125052 | cazy family |
| Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | 0.012353866 | kinase family |
| glycolipid metabolic process | 0.018485695 | GO:0006664 |
| cytoplasm | 0.022556118 | GO:0005737 |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.026794365 | kinase family |
| glucosyltransferase activity | 0.036971389 | GO:0046527 |
| Phenylpropanoid biosynthesis | 0.044584949 | KEGG pathway |
| transcription factor activity, sequence-specific DNA binding | 0.047236901 | GO:0003700 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004885 | AT1G06330 (2.00E-20) | Heavy metal transport/detoxification superfamily protein |
| CRO_T005199 | AT1G63420 (1.00E-142) | Arabidopsis thaliana protein of unknown function (DUF821) |
| CRO_T007072 | AT1G72510 (1.00E-42) | Protein of unknown function (DUF1677) |
| CRO_T014204 | AT1G06330 (1.00E-19) | Heavy metal transport/detoxification superfamily protein |
| CRO_T024004 | AT4G02550 (2.00E-14) | unknown protein |
| CRO_T027645 | AT1G49580 (0) | Calcium-dependent protein kinase (CDPK) family protein |
| CRO_T028948 | AT5G55560 (3.00E-140) | Protein kinase superfamily protein |
| CRO_T030654 | AT5G64810 (8.00E-22) | ATWRKY51|WRKY DNA-BINDING PROTEIN 51 |
| CRO_T031775 | AT1G74930 (2.00E-22) | ORA47|Integrase-type DNA-binding superfamily protein |
| CRO_T031986 | AT1G55600 (1.00E-19) | MINI3|MINISEED 3; WRKY10|WRKY DNA-binding protein 10 |
| CRO_T033039 | AT1G05260 (7.00E-77) | RCI3|RARE COLD INDUCIBLE GENE 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000188 | details | |
| TissueCFM000717 | Transcription_related, Transcription factor: WRKY lipoate biosynthesis and incorporation I Lipoic acid metabolism Tropane, piperidine and pyridine alkaloid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc polyamine transport microtubule severing protein lipoylation glycolipid metabolic process lipoate biosynthetic process periplasmic space Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase polyamine binding lipoate synthase activity glucosyltransferase activity | details |
| TissueCFM000965 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase Arginine and proline metabolism integral component of mitochondrial inner membrane mitochondrial inner membrane presequence translocase complex peptidyl-proline hydroxylation procollagen-proline 4-dioxygenase activity P-P-bond-hydrolysis-driven protein transmembrane transporter activity magnesium ion transmembrane transport protein import into mitochondrial matrix magnesium ion transport protein channel activity magnesium ion transmembrane transporter activity L-ascorbic acid binding | details |
| TissueCFM001538 | Transcription_related, Transcription factor: WRKY formation of glycosidic bonds, GlycosylTransferases: GTnc clathrin heavy chain binding UDP-arabinopyranose mutase activity sequence-specific DNA binding clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit transcription factor activity, sequence-specific DNA binding UDP-L-arabinose metabolic process plant-type cell wall biogenesis clathrin-mediated endocytosis Amino sugar and nucleotide sugar metabolism structural molecule activity ribosome binding regulation of transcription, DNA-templated cellulose biosynthetic process | details |
| TissueCFM001552 | baicalein degradation (hydrogen peroxide detoxification) Hippo signaling pathway Phenylpropanoid biosynthesis | details |
| TissueCFM001634 | baicalein degradation (hydrogen peroxide detoxification) formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase glucosyltransferase activity glycolipid metabolic process Phenylpropanoid biosynthesis calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity peptidyl-serine phosphorylation hydrogen peroxide catabolic process protein autophosphorylation abscisic acid-activated signaling pathway | details |
| TissueCFM001674 | formation of glycosidic bonds, GlycosylTransferases: GTnc γ-glutamyl cycle sphingomyelin phosphodiesterase D activity potassium ion transmembrane transport acetylglucosaminyltransferase activity potassium ion transmembrane transporter activity integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |