TissueCFM001577's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cyanoalanine nitrilase activity | 0.000620586 | GO:0047427 |
| 3-cyanoalanine hydratase activity | 0.000620586 | GO:0047558 |
| detoxification of nitrogen compound | 0.00113774 | GO:0051410 |
| cyanide catabolic process | 0.00113774 | GO:0019500 |
| plasma membrane | 0.001420637 | GO:0005886 |
| cyanide detoxification I | 0.005169714 | plantCyc |
| L-asparagine degradation I | 0.005169714 | plantCyc |
| regulation of gene expression | 0.007194837 | GO:0010468 |
| pyruvate decarboxylation to acetyl CoA | 0.007316622 | plantCyc |
| superpathway of aspartate and asparagine biosynthesis | 0.007316622 | plantCyc |
| Cyanoamino acid metabolism | 0.010535936 | KEGG pathway |
| Peroxisome | 0.032267898 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.045631197 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008399 | AT2G46060 (0) | transmembrane protein-related |
| CRO_T015264 | AT5G10940 (0) | ASG2|ALTERED SEED GERMINATION 2 |
| CRO_T015445 | AT2G27450 (4.00E-13) | NLP1|nitrilase-like protein 1 |
| CRO_T022671 | AT2G34590 (0) | Transketolase family protein |
| CRO_T027789 | - | - |
| CRO_T029974 | AT4G18530 (7.00E-113) | Protein of unknown function (DUF707) |
| CRO_T030969 | AT2G15560 (3.00E-134) | Putative endonuclease or glycosyl hydrolase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000546 | Peroxisome transmembrane receptor protein tyrosine kinase activity cellular protein metabolic process regulation of gene expression peptidyl-tyrosine phosphorylation Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X | details |
| TissueCFM000883 | detoxification of nitrogen compound cyanide catabolic process meiosis I 3-cyanoalanine hydratase activity cyanoalanine nitrilase activity cyanide detoxification I L-asparagine degradation I Meiosis - yeast pyruvate decarboxylation to acetyl CoA superpathway of aspartate and asparagine biosynthesis chromosome organization Cyanoamino acid metabolism Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription factor: RWP-RK DNA metabolic process | details |
| TissueCFM001475 | 3-cyanoalanine hydratase activity adenylosuccinate synthase activity cyanoalanine nitrilase activity 'de novo' AMP biosynthetic process cyanide catabolic process detoxification of nitrogen compound positive regulation of phosphorylation of RNA polymerase II C-terminal domain positive regulation of cyclin-dependent protein serine/threonine kinase activity cyanide detoxification I L-asparagine degradation I cyclin-dependent protein serine/threonine kinase regulator activity Cyanoamino acid metabolism Transcriptional misregulation in cancers positive regulation of transcription from RNA polymerase II promoter superpathway of aspartate and asparagine biosynthesis cyclin-dependent protein kinase holoenzyme complex adenosine ribonucleotides de novo biosynthesis homogalacturonan degradation Purine metabolism | details |
| TissueCFM001584 | plasma membrane Riboflavin metabolism Sulfur metabolism D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) 3'(2'),5'-bisphosphate nucleotidase activity chloroplast accumulation movement phosphate-containing compound metabolic process chloroplast avoidance movement glucose transmembrane transport glucose import proton transport glucose transmembrane transporter activity sugar:proton symporter activity | details |
| TissueCFM001760 | nucleotide phosphorylation adenylate kinase activity pyruvate decarboxylation to acetyl CoA adenosine ribonucleotides de novo biosynthesis | details |
| TissueCFM001793 | cyanoalanine nitrilase activity 3-cyanoalanine hydratase activity detoxification of nitrogen compound cyanide catabolic process 3'(2'),5'-bisphosphate nucleotidase activity cyanide detoxification I L-asparagine degradation I phosphate-containing compound metabolic process cytokinesis by cell plate formation cell division site D-myo-inositol (1,4,5)-trisphosphate degradation superpathway of aspartate and asparagine biosynthesis Cyanoamino acid metabolism Sulfur metabolism cell plate nuclear envelope plasma membrane magnesium ion binding RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |