TissueCFM001793's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cyanoalanine nitrilase activity | 0.001477651 | GO:0047427 |
| 3-cyanoalanine hydratase activity | 0.001477651 | GO:0047558 |
| detoxification of nitrogen compound | 0.001477651 | GO:0051410 |
| cyanide catabolic process | 0.001477651 | GO:0019500 |
| 3'(2'),5'-bisphosphate nucleotidase activity | 0.00196991 | GO:0008441 |
| cyanide detoxification I | 0.004431642 | plantCyc |
| L-asparagine degradation I | 0.004431642 | plantCyc |
| phosphate-containing compound metabolic process | 0.004798462 | GO:0006796 |
| cytokinesis by cell plate formation | 0.004798462 | GO:0000911 |
| cell division site | 0.005213151 | GO:0032153 |
| D-myo-inositol (1,4,5)-trisphosphate degradation | 0.006641571 | plantCyc |
| superpathway of aspartate and asparagine biosynthesis | 0.006641571 | plantCyc |
| Cyanoamino acid metabolism | 0.008280437 | KEGG pathway |
| Sulfur metabolism | 0.008280437 | KEGG pathway |
| cell plate | 0.010421681 | GO:0009504 |
| nuclear envelope | 0.013020365 | GO:0005635 |
| plasma membrane | 0.020591661 | GO:0005886 |
| magnesium ion binding | 0.036674784 | GO:0000287 |
| RNA transport | 0.049186045 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000045 | - | - |
| CRO_T009694 | AT5G10650 (3.00E-20) | RING/U-box superfamily protein |
| CRO_T015445 | AT2G27450 (4.00E-13) | NLP1|nitrilase-like protein 1 |
| CRO_T017343 | AT5G63980 (2.00E-33) | ALX8|ALTERED EXPRESSION OF APX2 8; FRY1|FIERY1; HOS2|HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2; RON1|ROTUNDA 1; SUPO1|suppressors of PIN1 overexpression 1 |
| CRO_T031069 | AT3G24740 (4.00E-77) | Protein of unknown function (DUF1644) |
| CRO_T032618 | AT3G06000 (7.00E-36) | RNI-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000883 | detoxification of nitrogen compound cyanide catabolic process meiosis I 3-cyanoalanine hydratase activity cyanoalanine nitrilase activity cyanide detoxification I L-asparagine degradation I Meiosis - yeast pyruvate decarboxylation to acetyl CoA superpathway of aspartate and asparagine biosynthesis chromosome organization Cyanoamino acid metabolism Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription factor: RWP-RK DNA metabolic process | details |
| TissueCFM001369 | CTD phosphatase activity dephosphorylation of RNA polymerase II C-terminal domain cytokinesis by cell plate formation cell division site cell plate nuclear envelope RNA transport | details |
| TissueCFM001370 | homogalacturonan degradation cell division site hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET cell plate | details |
| TissueCFM001475 | 3-cyanoalanine hydratase activity adenylosuccinate synthase activity cyanoalanine nitrilase activity 'de novo' AMP biosynthetic process cyanide catabolic process detoxification of nitrogen compound positive regulation of phosphorylation of RNA polymerase II C-terminal domain positive regulation of cyclin-dependent protein serine/threonine kinase activity cyanide detoxification I L-asparagine degradation I cyclin-dependent protein serine/threonine kinase regulator activity Cyanoamino acid metabolism Transcriptional misregulation in cancers positive regulation of transcription from RNA polymerase II promoter superpathway of aspartate and asparagine biosynthesis cyclin-dependent protein kinase holoenzyme complex adenosine ribonucleotides de novo biosynthesis homogalacturonan degradation Purine metabolism | details |
| TissueCFM001577 | cyanoalanine nitrilase activity 3-cyanoalanine hydratase activity detoxification of nitrogen compound cyanide catabolic process plasma membrane cyanide detoxification I L-asparagine degradation I regulation of gene expression pyruvate decarboxylation to acetyl CoA superpathway of aspartate and asparagine biosynthesis Cyanoamino acid metabolism Peroxisome formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001582 | 3'(2'),5'-bisphosphate nucleotidase activity Sulfur metabolism D-myo-inositol (1,4,5)-trisphosphate degradation mitochondrial fission phosphate-containing compound metabolic process mitochondrial outer membrane magnesium ion binding response to oxidative stress | details |
| TissueCFM001583 | glutamate N-acetyltransferase activity acetyl-CoA:L-glutamate N-acetyltransferase activity 3'(2'),5'-bisphosphate nucleotidase activity D-myo-inositol (1,4,5)-trisphosphate degradation L-arginine biosynthesis II (acetyl cycle) L-ornithine biosynthesis I Sulfur metabolism ornithine biosynthetic process 2-Oxocarboxylic acid metabolism phosphate-containing compound metabolic process arginine biosynthetic process glucose transmembrane transport glucose import proton transport glucose transmembrane transporter activity sugar:proton symporter activity 2-alkenal reductase [NAD(P)] activity magnesium ion binding | details |
| TissueCFM001584 | plasma membrane Riboflavin metabolism Sulfur metabolism D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) 3'(2'),5'-bisphosphate nucleotidase activity chloroplast accumulation movement phosphate-containing compound metabolic process chloroplast avoidance movement glucose transmembrane transport glucose import proton transport glucose transmembrane transporter activity sugar:proton symporter activity | details |
| TissueCFM001757 | intrinsic component of membrane Sulfur metabolism 3'(2'),5'-bisphosphate nucleotidase activity cytoplasm D-myo-inositol (1,4,5)-trisphosphate degradation farnesylcysteine salvage pathway geraniol and geranial biosynthesis detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis cellular transition metal ion homeostasis phosphate-containing compound metabolic process protein catabolic process metal ion transport benzoate biosynthesis I (CoA-dependent, β-oxidative) very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II transition metal ion binding aspartic-type endopeptidase activity | details |
| TissueCFM001760 | nucleotide phosphorylation adenylate kinase activity pyruvate decarboxylation to acetyl CoA adenosine ribonucleotides de novo biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |