TissueCFM001705's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| rosmarinic acid biosynthesis I | 0.004721672 | plantCyc |
| rosmarinic acid biosynthesis II | 0.004721672 | plantCyc |
| sulfate activation for sulfonation | 0.004721672 | plantCyc |
| hydrogen sulfide biosynthetic process | 0.005995962 | GO:0070814 |
| oxidative photosynthetic carbon pathway | 0.005995962 | GO:0009854 |
| male gamete generation | 0.005995962 | GO:0048232 |
| protein depalmitoylation | 0.006744261 | GO:0002084 |
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 0.008019018 | plantCyc |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 0.008019018 | plantCyc |
| Transcription_related, Transcription regulator: SNF2 | 0.009478603 | TF family |
| adenylylsulfate kinase activity | 0.010779746 | GO:0004020 |
| palmitoyl-(protein) hydrolase activity | 0.010779746 | GO:0008474 |
| hydroxyphenylpyruvate reductase activity | 0.010779746 | GO:0047995 |
| hydroxypyruvate reductase activity | 0.010779746 | GO:0016618 |
| glyoxylate reductase (NADP) activity | 0.010779746 | GO:0030267 |
| Glucagon signaling pathway | 0.011805226 | KEGG pathway |
| L-aspartate:2-oxoglutarate aminotransferase activity | 0.014111328 | GO:0004069 |
| L-phenylalanine:2-oxoglutarate aminotransferase activity | 0.014292058 | GO:0080130 |
| carboxylic ester hydrolase activity | 0.016347614 | GO:0052689 |
| Sulfur metabolism | 0.020047544 | KEGG pathway |
| sulfate assimilation | 0.023338685 | GO:0000103 |
| cytosol | 0.033080512 | GO:0005829 |
| biosynthetic process | 0.033604921 | GO:0009058 |
| Glycerophospholipid metabolism | 0.043874048 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002817 | AT1G01480 (2.00E-09) | ACS2|1-amino-cyclopropane-1-carboxylate synthase 2 |
| CRO_T008306 | AT1G51300 (1.00E-24) | alpha/beta-Hydrolases superfamily protein |
| CRO_T013708 | AT1G33980 (2.00E-06) | ATUPF3; UPF3|Smg-4/UPF3 family protein |
| CRO_T021333 | AT3G19480 (3.00E-24) | PGDH3|phosphoglycerate dehydrogenase 3 |
| CRO_T023102 | AT3G54280 (1.00E-17) | RGD3|ROOT GROWTH DEFECTIVE 3 |
| CRO_T032820 | AT3G06670 (1.00E-138) | binding |
| CRO_T033784 | AT3G03900 (6.00E-91) | APK3|adenosine-5'-phosphosulfate (APS) kinase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000365 | seleno-amino acid biosynthesis protein depalmitoylation 'de novo' L-methionine biosynthetic process L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity cystathionine gamma-lyase activity cystathionine beta-lyase activity palmitoyl-(protein) hydrolase activity Transcription_related, Transcription factor: C3H carboxylic ester hydrolase activity Base excision repair Glycerophospholipid metabolism Biosynthesis of amino acids 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM000721 | seleno-amino acid biosynthesis cystathionine gamma-lyase activity L-cysteine desulfhydrase activity L-cystine L-cysteine-lyase (deaminating) cystathionine beta-lyase activity glucosinolate metabolic process protein depalmitoylation 'de novo' L-methionine biosynthetic process palmitoyl-(protein) hydrolase activity carboxylic ester hydrolase activity poly(A) RNA binding ribosome biogenesis transferase activity, transferring hexosyl groups mRNA splicing, via spliceosome spliceosomal complex cytoplasm formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM000777 | formation of glycosidic bonds, GlycosylTransferases: GTnc seleno-amino acid biosynthesis Various types of N-glycan biosynthesis cystathionine gamma-lyase activity L-cystine L-cysteine-lyase (deaminating) fucosyltransferase activity L-cysteine desulfhydrase activity cystathionine beta-lyase activity 'de novo' L-methionine biosynthetic process protein depalmitoylation fucosylation palmitoyl-(protein) hydrolase activity Golgi cisterna membrane biological regulation carboxylic ester hydrolase activity protein glycosylation Glycerophospholipid metabolism cell part Biosynthesis of amino acids 2-alkenal reductase [NAD(P)] activity protein binding | details |
| TissueCFM001024 | transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex S-methyl-5-thio-α-D-ribose 1-phosphate degradation 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc L-phenylalanine:2-oxoglutarate aminotransferase activity L-aspartate:2-oxoglutarate aminotransferase activity RNA polymerase III activity biosynthetic process Purine metabolism RNA transport | details |
| TissueCFM001660 | protein transporter activity rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II hydroxyphenylpyruvate reductase activity 4-hydroxybenzoate biosynthesis I (eukaryotes) signal transduction oxidative photosynthetic carbon pathway glyoxylate reductase (NADP) activity hydroxypyruvate reductase activity protein phosphatase type 2A regulator activity protein import into nucleus, docking protein import into nucleus, translocation ribosomal protein import into nucleus regulation of protein phosphatase type 2A activity nuclear localization sequence binding Ran GTPase binding MAPK signaling pathway - fly NLS-bearing protein import into nucleus nuclear periphery protein phosphatase type 2A complex clathrin adaptor complex nuclear membrane nuclear envelope protein import into nucleus | details |
Expression profiles
 Show details about module gene expression profiling |