TissueCFM001728's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of endoplasmic reticulum unfolded protein response | 0.003301532 | GO:1900101 |
| pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 0.003301532 | GO:0052033 |
| chain elongation of O-linked mannose residue | 0.003301532 | GO:0044845 |
| cell wall mannoprotein biosynthetic process | 0.003301532 | GO:0000032 |
| protein O-linked mannosylation | 0.00528167 | GO:0035269 |
| dolichyl-phosphate-mannose-protein mannosyltransferase complex | 0.006436646 | GO:0031502 |
| histone lysine methylation | 0.008800182 | GO:0034968 |
| Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | 0.009286528 | kinase family |
| Transcription_related, Transcription regulator: SET | 0.009286528 | TF family |
| Lysine degradation | 0.013806304 | KEGG pathway |
| histone-lysine N-methyltransferase activity | 0.01541477 | GO:0018024 |
| dolichyl-phosphate-mannose-protein mannosyltransferase activity | 0.01541477 | GO:0004169 |
| defense response to fungus | 0.022602304 | GO:0050832 |
| histone binding | 0.026949948 | GO:0042393 |
| MAPK signaling pathway - plant | 0.029024985 | KEGG pathway |
| defense response to bacterium | 0.037844387 | GO:0042742 |
| multicellular organism development | 0.040194354 | GO:0007275 |
| chromosome | 0.043367176 | GO:0005694 |
| protein serine/threonine phosphatase activity | 0.048978727 | GO:0004722 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002499 | AT1G49030 (2.00E-06) | PLAC8 family protein |
| CRO_T002748 | AT5G01110 (5.00E-33) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T010656 | AT5G10740 (1.00E-21) | Protein phosphatase 2C family protein |
| CRO_T020501 | AT5G47750 (0) | D6PKL2|D6 protein kinase like 2 |
| CRO_T023405 | AT2G25110 (8.00E-04) | AtSDF2|STROMAL CELL-DERIVED FACTOR 2-like protein precursor; ATSDL|ATSDF2-LIKE |
| CRO_T028941 | AT5G04940 (1.00E-96) | SUVH1|SU(VAR)3-9 homolog 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000809 | protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.Other: Other Protein Kinase Transcription_related, Transcription regulator: SET histone lysine methylation Base excision repair Lysine degradation N-Glycan biosynthesis nuclease activity histone-lysine N-methyltransferase activity chromosome histone binding cellular process embryo development ending in seed dormancy | details |
| TissueCFM001361 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 detection of visible light vacuolar sequestering of sodium ion protein-tetrapyrrole linkage Circadian rhythm - plant photoreceptor activity red, far-red light phototransduction formation of glycosidic bonds, GlycosylTransferases: GTnc oligopeptide transport hyperosmotic salinity response signal transduction by protein phosphorylation protein-chromophore linkage phosphorelay signal transduction system phosphorelay sensor kinase activity mRNA splicing, via spliceosome | details |
| TissueCFM001658 | response to UV-C inactivation of MAPK activity regulation of photosynthesis prolyl-tRNA aminoacylation phosphatidate phosphatase activity proline-tRNA ligase activity guanyl-nucleotide exchange factor activity microtubule minus-end binding S-methyl-5-thioribose-1-phosphate isomerase activity MAP kinase tyrosine/serine/threonine phosphatase activity phospholipid dephosphorylation eukaryotic translation initiation factor 2B complex spindle microtubule HAUS complex diacylglycerol and triacylglycerol biosynthesis phosphatidate metabolism, as a signaling molecule phospholipid metabolic process plant ovule development spindle assembly L-methionine biosynthetic process from methylthioadenosine response to UV-B seed development peptidyl-tyrosine dephosphorylation embryo sac development protein tyrosine phosphatase activity regulation of translational initiation | details |
| TissueCFM001787 | clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit response to metal ion innate immune response Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) structural molecule activity protein serine/threonine kinase activity non-membrane spanning protein tyrosine kinase activity Endocytosis MAPK signaling pathway - plant peptidyl-tyrosine phosphorylation | details |
| TissueCFM001802 | Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase tissue development regulation of response to stimulus plant organ development cellular response to stimulus anatomical structure morphogenesis response to organic substance response to bacterium defense response to other organism response to osmotic stress MAPK signaling pathway - plant mRNA surveillance pathway single-organism cellular process regulation of cellular process | details |
Expression profiles
 Show details about module gene expression profiling |