TissueCFM001658's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to UV-C | 0.015267079 | GO:0010225 |
| inactivation of MAPK activity | 0.015267079 | GO:0000188 |
| regulation of photosynthesis | 0.015267079 | GO:0010109 |
| prolyl-tRNA aminoacylation | 0.015267079 | GO:0006433 |
| phosphatidate phosphatase activity | 0.016130109 | GO:0008195 |
| proline-tRNA ligase activity | 0.016130109 | GO:0004827 |
| guanyl-nucleotide exchange factor activity | 0.016130109 | GO:0005085 |
| microtubule minus-end binding | 0.016130109 | GO:0051011 |
| S-methyl-5-thioribose-1-phosphate isomerase activity | 0.016130109 | GO:0046523 |
| MAP kinase tyrosine/serine/threonine phosphatase activity | 0.016130109 | GO:0017017 |
| phospholipid dephosphorylation | 0.01628296 | GO:0046839 |
| eukaryotic translation initiation factor 2B complex | 0.01733265 | GO:0005851 |
| spindle microtubule | 0.01733265 | GO:0005876 |
| HAUS complex | 0.01733265 | GO:0070652 |
| diacylglycerol and triacylglycerol biosynthesis | 0.019044006 | plantCyc |
| phosphatidate metabolism, as a signaling molecule | 0.019044006 | plantCyc |
| phospholipid metabolic process | 0.020348888 | GO:0006644 |
| plant ovule development | 0.022599188 | GO:0048481 |
| spindle assembly | 0.022599188 | GO:0051225 |
| L-methionine biosynthetic process from methylthioadenosine | 0.022599188 | GO:0019509 |
| response to UV-B | 0.028461517 | GO:0010224 |
| seed development | 0.029563419 | GO:0048316 |
| peptidyl-tyrosine dephosphorylation | 0.031254222 | GO:0035335 |
| embryo sac development | 0.031254222 | GO:0009553 |
| protein tyrosine phosphatase activity | 0.034515531 | GO:0004725 |
| regulation of translational initiation | 0.043481256 | GO:0006446 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003035 | AT5G38880 (0) | 5-Aug|augmin subunit 5 |
| CRO_T008109 | AT1G03365 (4.00E-05) | RING/U-box superfamily protein |
| CRO_T008489 | AT3G02600 (1.00E-113) | ATLPP3|LIPID PHOSPHATE PHOSPHATASE 3 |
| CRO_T008674 | AT1G53880 (1.00E-16) | Eukaryotic translation initiation factor 2B (eIF-2B) family protein |
| CRO_T010656 | AT5G10740 (1.00E-21) | Protein phosphatase 2C family protein |
| CRO_T018374 | AT3G55270 (0) | ATMKP1|ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1; MKP1|mitogen-activated protein kinase phosphatase 1 |
| CRO_T030174 | AT1G10020 (5.00E-159) | Protein of unknown function (DUF1005) |
| CRO_T031391 | AT4G36790 (0) | Major facilitator superfamily protein |
| CRO_T033626 | AT5G52520 (5.00E-138) | OVA6|OVULE ABORTION 6; PRORS1|PROLYL-TRNA SYNTHETASE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000688 | Transcription_related, Transcription factor: MIKC proline-tRNA ligase activity regulation of photosynthesis prolyl-tRNA aminoacylation cytokinesis plant ovule development seed development microtubule cytoskeleton organization embryo sac development Aminoacyl-tRNA biosynthesis RNA degradation microtubule binding | details |
| TissueCFM000870 | thioredoxin pathway regulation of tocopherol cyclase activity iron ion transmembrane transport L-methionine biosynthetic process from methylthioadenosine cellular iron ion homeostasis protein stabilization eukaryotic translation initiation factor 2B complex iron ion transmembrane transporter activity guanyl-nucleotide exchange factor activity S-methyl-5-thioribose-1-phosphate isomerase activity plastoglobule cell regulation of translational initiation positive regulation of GTPase activity translational initiation Plant-pathogen interaction RNA transport cell redox homeostasis | details |
| TissueCFM000908 | D-cysteine catabolic process histone H3-K9 demethylation negative regulation of histone acetylation GDP-mannose transmembrane transport GDP-mannose transmembrane transporter activity 1-aminocyclopropane-1-carboxylate deaminase activity D-cysteine desulfhydrase activity response to brassinosteroid Cellular senescence ethylene biosynthetic process Transcription_related, Transcription regulator: Jumonji vegetative to reproductive phase transition of meristem leaf development cobalt ion binding unidimensional cell growth Ubiquitin mediated proteolysis proteasome-mediated ubiquitin-dependent protein catabolic process protein ubiquitination involved in ubiquitin-dependent protein catabolic process multicellular organism development zinc ion binding | details |
| TissueCFM000950 | cellulose synthase (UDP-forming) activity cellulose biosynthetic process cell wall organization N-Glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase Ubiquitin_Proteasome_system, E3: RING | details |
| TissueCFM001053 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, DUB: USP response to UV-C inactivation of MAPK activity MAP kinase tyrosine/serine/threonine phosphatase activity protein deubiquitination response to osmotic stress oligopeptide transport peptidyl-tyrosine dephosphorylation response to UV-B thiol-dependent ubiquitinyl hydrolase activity Spliceosome protein tyrosine phosphatase activity response to salt stress nuclear chromatin cell Golgi membrane cell redox homeostasis | details |
| TissueCFM001113 | phytochromobilin biosynthesis Transcription_related, Transcription factor: G2-like proline-tRNA ligase activity MAP kinase tyrosine/serine/threonine phosphatase activity phytochromobilin:ferredoxin oxidoreductase activity regulation of photosynthesis prolyl-tRNA aminoacylation inactivation of MAPK activity phytochromobilin biosynthetic process response to UV-C octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) chloroplast-nucleus signaling pathway plant ovule development response to UV-B seed development embryo sac development peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity histone binding cobalt ion binding Aminoacyl-tRNA biosynthesis Fatty acid metabolism Porphyrin and chlorophyll metabolism single-organism process response to salt stress | details |
| TissueCFM001400 | integral component of membrane response to UV-C inactivation of MAPK activity MAP kinase tyrosine/serine/threonine phosphatase activity phragmoplast spindle nuclear chromatin formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) oligopeptide transport response to UV-B peptidyl-tyrosine dephosphorylation plasma membrane cellulose biosynthetic process response to salt stress | details |
| TissueCFM001641 | maltose alpha-glucosidase activity MAP kinase tyrosine/serine/threonine phosphatase activity alpha-1,4-glucosidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc response to UV-C inactivation of MAPK activity maltose metabolic process Ubiquitin_Proteasome_system, DUB: USP thiol-dependent ubiquitinyl hydrolase activity protein tyrosine phosphatase activity oligopeptide transport response to UV-B protein deubiquitination peptidyl-tyrosine dephosphorylation unidimensional cell growth N-Glycan biosynthesis defense response to bacterium response to salt stress cellulose biosynthetic process Spliceosome | details |
| TissueCFM001703 | spindle microtubule HAUS complex protein phosphorylation spindle assembly Protein_kinases_phosphatases, PPC:1.14.1: Crinkly 4 Like Kinase NF-kappa B signaling pathway microtubule minus-end binding protein serine/threonine kinase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription factor: C3H formation of glycosidic bonds, GlycosylTransferases: GTnc transferase activity, transferring glycosyl groups | details |
| TissueCFM001728 | regulation of endoplasmic reticulum unfolded protein response pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response chain elongation of O-linked mannose residue cell wall mannoprotein biosynthetic process protein O-linked mannosylation dolichyl-phosphate-mannose-protein mannosyltransferase complex histone lysine methylation Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription regulator: SET Lysine degradation histone-lysine N-methyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity defense response to fungus histone binding MAPK signaling pathway - plant defense response to bacterium multicellular organism development chromosome protein serine/threonine phosphatase activity | details |
| TissueCFM001786 | Ubiquitin_Proteasome_system, E3: RING Cellular senescence Mismatch repair aspartate family amino acid biosynthetic process homoserine dehydrogenase activity aspartate kinase activity Biosynthesis of amino acids kinesin complex cellular amino acid biosynthetic process microtubule-based movement DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |