TissueCFM001786's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3: RING | 0.001336826 | ubs family |
| Cellular senescence | 0.00633397 | KEGG pathway |
| Mismatch repair | 0.00633397 | KEGG pathway |
| aspartate family amino acid biosynthetic process | 0.010424761 | GO:0009067 |
| homoserine dehydrogenase activity | 0.023102186 | GO:0004412 |
| aspartate kinase activity | 0.023102186 | GO:0004072 |
| Biosynthesis of amino acids | 0.030350829 | KEGG pathway |
| kinesin complex | 0.035020888 | GO:0005871 |
| cellular amino acid biosynthetic process | 0.035123829 | GO:0008652 |
| microtubule-based movement | 0.040700803 | GO:0007018 |
| DNA repair | 0.04216016 | GO:0006281 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000524 | AT1G31230 (6.00E-160) | AK-HSDH|ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE; AK-HSDH I|aspartate kinase-homoserine dehydrogenase i |
| CRO_T008109 | AT1G03365 (4.00E-05) | RING/U-box superfamily protein |
| CRO_T010127 | AT3G24495 (1.00E-52) | ATMSH7|MUTS HOMOLOG 7; MSH6-2|MUTS HOMOLOG 6-2 |
| CRO_T016183 | AT5G65930 (4.00E-87) | KCBP|KINESIN-LIKE CALMODULIN-BINDING PROTEIN; PKCBP|POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN; ZWI|ZWICHEL |
| CRO_T018144 | AT4G29730 (4.00E-17) | NFC5|nucleosome/chromatin assembly factor group C5 |
| CRO_T023299 | AT5G12310 (2.00E-42) | RING/U-box superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000641 | anaphase-promoting complex spindle Transcription_related, Transcription factor: ARF Ubiquitin_Proteasome_system, E3 adaptor: Cullin megagametogenesis transcription, RNA-templated single-organism developmental process response to hormone Cysteine and methionine metabolism Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process single-organism cellular process regulation of cellular process RNA-directed RNA polymerase activity | details |
| TissueCFM000908 | D-cysteine catabolic process histone H3-K9 demethylation negative regulation of histone acetylation GDP-mannose transmembrane transport GDP-mannose transmembrane transporter activity 1-aminocyclopropane-1-carboxylate deaminase activity D-cysteine desulfhydrase activity response to brassinosteroid Cellular senescence ethylene biosynthetic process Transcription_related, Transcription regulator: Jumonji vegetative to reproductive phase transition of meristem leaf development cobalt ion binding unidimensional cell growth Ubiquitin mediated proteolysis proteasome-mediated ubiquitin-dependent protein catabolic process protein ubiquitination involved in ubiquitin-dependent protein catabolic process multicellular organism development zinc ion binding | details |
| TissueCFM001344 | seed maturation pyruvate kinase activity potassium ion binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process fatty acid biosynthetic process magnesium ion binding nucleoside binding kinase activity Carbon metabolism alpha DNA polymerase:primase complex chloroplast stroma leading strand elongation formation of glycosidic bonds, GlycosylTransferases: GTnc lagging strand elongation double-strand break repair via nonhomologous end joining DNA replication initiation mitochondrion DNA biosynthetic process DNA-directed DNA polymerase activity 3'-5' exonuclease activity Golgi membrane nucleic acid phosphodiester bond hydrolysis Purine metabolism | details |
| TissueCFM001413 | Cellular senescence regulation of alternative mRNA splicing, via spliceosome seed germination chloroplast inner membrane cytoplasmic mRNA processing body integral component of membrane | details |
| TissueCFM001504 | regulation of alternative mRNA splicing, via spliceosome transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery specification of floral organ identity protein targeting to nuclear inner membrane RNA export from nucleus RNA catabolic process seed germination protein import into nucleus Mismatch repair RNA helicase activity nucleotide binding structural constituent of nuclear pore nuclear pore inner ring DNA repair RNA degradation cytoplasmic mRNA processing body nucleoplasm RNA transport | details |
| TissueCFM001658 | response to UV-C inactivation of MAPK activity regulation of photosynthesis prolyl-tRNA aminoacylation phosphatidate phosphatase activity proline-tRNA ligase activity guanyl-nucleotide exchange factor activity microtubule minus-end binding S-methyl-5-thioribose-1-phosphate isomerase activity MAP kinase tyrosine/serine/threonine phosphatase activity phospholipid dephosphorylation eukaryotic translation initiation factor 2B complex spindle microtubule HAUS complex diacylglycerol and triacylglycerol biosynthesis phosphatidate metabolism, as a signaling molecule phospholipid metabolic process plant ovule development spindle assembly L-methionine biosynthetic process from methylthioadenosine response to UV-B seed development peptidyl-tyrosine dephosphorylation embryo sac development protein tyrosine phosphatase activity regulation of translational initiation | details |
| TissueCFM001718 | ESCRT I complex transcription factor TFIID complex C-5 methylation of cytosine protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway RNA polymerase II transcriptional preinitiation complex assembly histone acetyltransferase binding DNA (cytosine-5-)-methyltransferase activity protein complex binding transcription factor binding transcription coactivator activity transcription regulatory region DNA binding Cellular senescence regulation of transcription from RNA polymerase II promoter chromatin binding Basal transcription factors Cysteine and methionine metabolism Endocytosis | details |
Expression profiles
 Show details about module gene expression profiling |