TissueCFM001798's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Other types of O-glycan biosynthesis | 0.001595037 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002925532 | cazy family |
| Transcription_related, Transcription regulator: LIM | 0.004873365 | TF family |
| cyclin-dependent protein serine/threonine kinase activity | 0.018239289 | GO:0004693 |
| regulation of cell cycle | 0.02225339 | GO:0051726 |
| Transcription_related, Transcription factor: HB | 0.024250095 | TF family |
| ATP-dependent peptidase activity | 0.026196038 | GO:0004176 |
| zinc ion binding | 0.026196038 | GO:0008270 |
| metalloendopeptidase activity | 0.027288276 | GO:0004222 |
| cell division | 0.028928365 | GO:0051301 |
| carbohydrate transport | 0.028928365 | GO:0008643 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003885 | AT2G39900 (1.00E-15) | WLIM2a|WLIM2a |
| CRO_T007167 | AT5G11060 (4.00E-26) | KNAT4|KNOTTED1-like homeobox gene 4 |
| CRO_T010324 | AT5G13500 (2.00E-148) | unknown protein |
| CRO_T019289 | AT1G77610 (3.00E-79) | EamA-like transporter family protein |
| CRO_T021193 | AT5G11060 (7.00E-77) | KNAT4|KNOTTED1-like homeobox gene 4 |
| CRO_T032959 | AT3G47060 (0) | ftsh7|FTSH protease 7 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000597 | Transcription_related, Transcription regulator: LIM SREBP signaling pathway endoplasmic reticulum signal peptide binding cholesterol binding U2-type catalytic step 1 spliceosome cytoskeleton organization SRP-dependent cotranslational protein targeting to membrane signal recognition particle, endoplasmic reticulum targeting ER-associated ubiquitin-dependent protein catabolic process 7S RNA binding Protein export mRNA splicing, via spliceosome Endocytosis catalytic step 2 spliceosome small GTPase mediated signal transduction | details |
| TissueCFM000919 | Transcription_related, Transcription regulator: LIM Phagosome pyrimidine ribonucleosides salvage I UMP biosynthetic process defense response, incompatible interaction pyrimidine nucleoside salvage pyrimidine nucleobase metabolic process pyrophosphatase activity ferredoxin-NADP+ reductase activity photosynthesis light reactions microtubule-based process uridine kinase activity structural constituent of cytoskeleton Photosynthesis | details |
| TissueCFM001438 | Transcription_related, Transcription factor: HB regulation of catalytic activity carbohydrate transmembrane transport response to stimulus regulation of cellular process chloroplast thylakoid lumen intracellular ribonucleoprotein complex viral nucleocapsid | details |
| TissueCFM001542 | alpha-1,2-mannosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) Other types of O-glycan biosynthesis mannosylation ER-associated ubiquitin-dependent protein catabolic process N-Glycan biosynthesis Transcription_related, Transcription factor: Orphans | details |
| TissueCFM001664 | Other types of O-glycan biosynthesis Phagosome formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: zf-HD D-myo-inositol (1,4,5)-trisphosphate degradation cAMP-dependent protein kinase activity tubulin complex cellular response to gravity glycolysis I (from glucose 6-phosphate) response to cadmium ion phosphatidylinositol dephosphorylation microtubule-based process cell surface receptor signaling pathway | details |
| TissueCFM001684 | glucose-6-phosphate isomerase activity defense response to fungus, incompatible interaction gluconeogenesis Transcription_related, Transcription factor: C2C2-Dof Transcription_related, Transcription factor: HB glycolytic process GDP-mannose biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) phosphatidylcholine acyl editing phospholipases starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) triacylglycerol degradation lipid metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |