TissueCFM001542's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| alpha-1,2-mannosyltransferase activity | 0.000354636 | GO:0000026 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002437583 | cazy family |
| protein N-glycosylation (eukaryotic, high mannose) | 0.004071992 | plantCyc |
| Other types of O-glycan biosynthesis | 0.004785112 | KEGG pathway |
| mannosylation | 0.005849767 | GO:0097502 |
| ER-associated ubiquitin-dependent protein catabolic process | 0.009253238 | GO:0030433 |
| N-Glycan biosynthesis | 0.01377981 | KEGG pathway |
| Transcription_related, Transcription factor: Orphans | 0.014582338 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003500 | AT1G07050 (9.00E-10) | CCT motif family protein |
| CRO_T005243 | AT5G53470 (2.00E-12) | ACBP|ACYL-COA BINDING PROTEIN; ACBP1|acyl-CoA binding protein 1 |
| CRO_T010324 | AT5G13500 (2.00E-148) | unknown protein |
| CRO_T020664 | AT1G16900 (0) | EBS3|EMS-mutagenized bri1 suppressor 3 |
| CRO_T030110 | AT2G03440 (5.00E-08) | NRP1|nodulin-related protein 1 |
| CRO_T031351 | AT5G10820 (1.00E-152) | Major facilitator superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000173 | Transcription_related, Transcription factor: TCP Pyrimidine metabolism cytidylate kinase activity uridylate kinase activity CMP phosphorylation UTP and CTP de novo biosynthesis 'de novo' pyrimidine nucleobase biosynthetic process regulation of leaf development pyrimidine nucleotide biosynthetic process secondary shoot formation nucleotide phosphorylation pyrimidine ribonucleotides interconversion | details |
| TissueCFM000334 | Transcription_related, Transcription factor: NF-YC ajmaline and sarpagine biosynthesis Starch and sucrose metabolism | details |
| TissueCFM000690 | Histidine metabolism histidine decarboxylase activity choline biosynthesis I phosphatidylethanolamine biosynthesis II response to very low light intensity stimulus ethanolamine metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) carboxylic acid metabolic process vegetative to reproductive phase transition of meristem ribosomal large subunit assembly | details |
| TissueCFM001109 | glycerol transport cellular water homeostasis water transport plasmodesma ion transmembrane transport | details |
| TissueCFM001356 | alpha-1,2-mannosyltransferase activity protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BBR-BPC Glycosaminoglycan degradation mannosylation N-Glycan biosynthesis ER-associated ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: HB lipid binding | details |
| TissueCFM001362 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen secondary metabolite biosynthetic process indole glucosinolate metabolic process defense response to other organism Cytochrome_P450, Cytochrome P450: CYP71B Cytochrome_P450, Cytochrome P450: CYP81D metal ion binding sesamin biosynthesis vindoline and vinblastine biosynthesis membrane | details |
| TissueCFM001518 | metallocarboxypeptidase activity Transcription_related, Transcription regulator: IWS1 extracellular space transferase activity, transferring glycosyl groups | details |
| TissueCFM001533 | secologanin and strictosidine biosynthesis Transcription_related, Transcription factor: zf-HD L-amino acid transmembrane transporter activity polyamine transmembrane transporter activity polyamine transmembrane transport DNA binding transferase activity, transferring hexosyl groups lipid binding antiporter activity amino acid transmembrane transport Transcription_related, Transcription factor: HB Transcription_related, Transcription factor: MYB | details |
| TissueCFM001664 | Other types of O-glycan biosynthesis Phagosome formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: zf-HD D-myo-inositol (1,4,5)-trisphosphate degradation cAMP-dependent protein kinase activity tubulin complex cellular response to gravity glycolysis I (from glucose 6-phosphate) response to cadmium ion phosphatidylinositol dephosphorylation microtubule-based process cell surface receptor signaling pathway | details |
| TissueCFM001798 | Other types of O-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: LIM cyclin-dependent protein serine/threonine kinase activity regulation of cell cycle Transcription_related, Transcription factor: HB ATP-dependent peptidase activity zinc ion binding metalloendopeptidase activity cell division carbohydrate transport | details |
| TissueCFM001814 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity protein phosphorylation regulation of cyclin-dependent protein serine/threonine kinase activity cellular water homeostasis regulation of mitotic cell cycle glycerol transport water transport cell surface receptor signaling pathway ion transmembrane transport Transcription_related, Transcription factor: Orphans water channel activity receptor signaling protein serine/threonine kinase activity glycerol channel activity translational initiation | details |
Expression profiles
 Show details about module gene expression profiling |