TissueCFM001811's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cysteine and methionine metabolism | 0.007425381 | KEGG pathway |
| Ubiquitin_Proteasome_system, E2: UBC | 0.021747366 | ubs family |
| Transcription_related, Transcription factor: ERF | 0.024832496 | TF family |
| heat shock protein binding | 0.048228493 | GO:0031072 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010306 | AT2G45620 (2.00E-175) | URT1|UTP:RNA uridylyltransferase 1 |
| CRO_T011492 | AT2G41710 (1.00E-80) | Integrase-type DNA-binding superfamily protein |
| CRO_T016517 | AT3G09670 (5.00E-25) | Tudor/PWWP/MBT superfamily protein |
| CRO_T020704 | AT5G05080 (3.00E-21) | UBC22|ubiquitin-conjugating enzyme 22 |
| CRO_T023665 | AT2G24860 (1.00E-29) | DnaJ/Hsp40 cysteine-rich domain superfamily protein |
| CRO_T024632 | AT4G17330 (1.00E-12) | ATG2484-1|G2484-1 protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000188 | details | |
| TissueCFM000200 | details | |
| TissueCFM000201 | Lysosome Transcription_related, Transcription factor: ERF | details |
| TissueCFM000550 | DNA binding zinc ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc cell plate formation involved in plant-type cell wall biogenesis nuclease activity potassium ion transmembrane transporter activity intracellular ribonucleoprotein complex extrinsic component of membrane viral nucleocapsid | details |
| TissueCFM000743 | Ubiquitin_Proteasome_system, E2: UBC | details |
| TissueCFM001114 | Oxidative phosphorylation mitochondrial envelope mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) mitochondrial respiratory chain complex I hydrogen ion transmembrane transporter activity carboxylic ester hydrolase activity cytochrome-c oxidase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation benzoate biosynthesis I (CoA-dependent, β-oxidative) NADH dehydrogenase (ubiquinone) activity | details |
| TissueCFM001274 | One carbon pool by folate Signaling pathways regulating pluripotency of stem cells 5-formyltetrahydrofolate cyclo-ligase activity folate transformations II GARP complex retrograde transport, endosome to Golgi autophagy tetrahydrofolate interconversion folic acid-containing compound biosynthetic process organelle organization Autophagy - animal Ubiquitin_Proteasome_system, E2: UBC | details |
| TissueCFM001491 | Spliceosome U5 snRNA binding pre-mRNA intronic binding U2 snRNA binding U6 snRNA binding second spliceosomal transesterification activity queuine tRNA-ribosyltransferase activity U1 snRNA binding ARF guanyl-nucleotide exchange factor activity spliceosomal tri-snRNP complex assembly queuosine biosynthetic process regulation of ARF protein signal transduction ubiquitin binding poly(A) RNA binding catalytic step 2 spliceosome ubiquitin ligase complex viral nucleocapsid U5 snRNP intracellular ribonucleoprotein complex Cysteine and methionine metabolism cytoplasm | details |
Expression profiles
 Show details about module gene expression profiling |