TreatCFM000058's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to virus | 0.003218085 | GO:0009615 |
| wax biosynthetic process | 0.003218085 | GO:0010025 |
| positive regulation of posttranscriptional gene silencing | 0.003218085 | GO:0060148 |
| ceramide biosynthetic process | 0.004022012 | GO:0046513 |
| transcription, RNA-templated | 0.004824988 | GO:0001172 |
| production of siRNA involved in RNA interference | 0.004824988 | GO:0030422 |
| phosphatidylinositol phosphate kinase activity | 0.005059831 | GO:0016307 |
| sphingosine N-acyltransferase activity | 0.005059831 | GO:0050291 |
| RNA-directed RNA polymerase activity | 0.006070003 | GO:0003968 |
| 3-phosphoinositide biosynthesis | 0.006367434 | plantCyc |
| Inositol phosphate metabolism | 0.008658466 | KEGG pathway |
| phosphatidylinositol phosphorylation | 0.011016328 | GO:0046854 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004293 | AT1G34260 (2.00E-71) | FAB1D|FORMS APLOID AND BINUCLEATE CELLS 1A |
| CRO_T005630 | AT1G14790 (4.00E-132) | RDR1|RNA-dependent RNA polymerase 1 |
| CRO_T015781 | AT3G24870 (0) | Helicase/SANT-associated, DNA binding protein |
| CRO_T022659 | AT5G40780 (2.00E-27) | LHT1|lysine histidine transporter 1 |
| CRO_T023343 | - | - |
| CRO_T028796 | AT1G26200 (4.00E-59) | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000424 | HAUS complex phosphatidylinositol phosphate kinase activity geraniol dehydrogenase activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity receptor signaling protein serine/threonine kinase activity spindle assembly phosphatidylinositol phosphorylation 3-phosphoinositide biosynthesis Phenylpropanoid biosynthesis Inositol phosphate metabolism MAPK signaling pathway - plant | details |
| TreatCFM000840 | RNA-directed RNA polymerase activity transcription, RNA-templated nucleotide binding reactive oxygen species degradation superoxide radicals degradation positive regulation of posttranscriptional gene silencing response to virus wax biosynthetic process catalase activity glycerophosphodiester phosphodiesterase activity red or far-red light signaling pathway production of siRNA involved in RNA interference response to hydrogen peroxide Circadian rhythm Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase negative regulation of transcription, DNA-templated cell surface receptor signaling pathway Circadian rhythm - plant | details |
| TreatCFM001055 | esterified suberin biosynthesis positive regulation of posttranscriptional gene silencing wax biosynthetic process response to virus production of siRNA involved in RNA interference transcription, RNA-templated RNA-directed RNA polymerase activity transferase activity, transferring acyl groups other than amino-acyl groups Transcription_related, Transcription regulator: PHD Transcription_related, Transcription factor: GRAS | details |
| TreatCFM001829 | RNA-directed RNA polymerase activity transcription, RNA-templated response to virus wax biosynthetic process positive regulation of posttranscriptional gene silencing positive regulation of transcription elongation from RNA polymerase II promoter elongin complex production of siRNA involved in RNA interference glycerophosphodiester phosphodiesterase activity nucleotide binding Transcription_related, Transcription regulator: IWS1 Ubiquitin mediated proteolysis translation elongation factor activity translational elongation Ubiquitin_Proteasome_system, E3 adaptor: BTB Ubiquitin_Proteasome_system, E3 adaptor: SKP1 protein ubiquitination involved in ubiquitin-dependent protein catabolic process lipid metabolic process ubiquitin-protein transferase activity | details |
| TreatCFM002142 | leucine-tRNA ligase activity leucyl-tRNA aminoacylation CTD phosphatase activity dephosphorylation of RNA polymerase II C-terminal domain regulation of translational fidelity vacuolar transport DNA-directed RNA polymerase II, holoenzyme aminoacyl-tRNA editing activity threonine-type endopeptidase activity Transcription_related, Transcription regulator: Jumonji Transcription_related, Transcription regulator: PHD proteasome core complex cytosolic ribosome Aminoacyl-tRNA biosynthesis Proteasome Endocytosis proteolysis involved in cellular protein catabolic process embryo development ending in seed dormancy | details |
| TreatCFM002162 | CTD phosphatase activity dephosphorylation of RNA polymerase II C-terminal domain DNA-directed RNA polymerase II, holoenzyme Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Proteasome threonine-type endopeptidase activity cytosolic ribosome proteasome core complex Transcription_related, Transcription regulator: PHD vesicle docking exocyst exocytosis proteolysis involved in cellular protein catabolic process | details |
| TreatCFM002173 | ATP-dependent chromatin remodeling organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic Transcription_related, Transcription regulator: SNF2 pre-mRNA branch point binding mRNA splicing, via spliceosome protein tyrosine phosphatase activity DNA-dependent ATPase activity chromatin binding oxidoreductase activity, acting on CH-OH group of donors | details |
Expression profiles
 Show details about module gene expression profiling |