TreatCFM001055's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| esterified suberin biosynthesis | 0.001595037 | plantCyc |
| positive regulation of posttranscriptional gene silencing | 0.002024232 | GO:0060148 |
| wax biosynthetic process | 0.002024232 | GO:0010025 |
| response to virus | 0.002024232 | GO:0009615 |
| production of siRNA involved in RNA interference | 0.003642002 | GO:0030422 |
| transcription, RNA-templated | 0.003642002 | GO:0001172 |
| RNA-directed RNA polymerase activity | 0.008772705 | GO:0003968 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 0.025262984 | GO:0016747 |
| Transcription_related, Transcription regulator: PHD | 0.03113888 | TF family |
| Transcription_related, Transcription factor: GRAS | 0.041194722 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005630 | AT1G14790 (4.00E-132) | RDR1|RNA-dependent RNA polymerase 1 |
| CRO_T014185 | AT1G50600 (9.00E-43) | SCL5|scarecrow-like 5 |
| CRO_T022045 | AT4G12560 (3.00E-28) | CPR1|CONSTITUTIVE EXPRESSER OF PR GENES 1; CPR30|CONSTITUTIVE EXPRESSER OF PR GENES 30 |
| CRO_T026866 | - | - |
| CRO_T027138 | AT3G02890 (2.00E-22) | RING/FYVE/PHD zinc finger superfamily protein |
| CRO_T030177 | AT5G41040 (3.00E-61) | ASFT|aliphatic suberin feruloyl-transferase; HHT|hydroxycinnamoyl- CoA:ω -hydroxyacid O-hydroxycinnamoyltransferase; RWP1|REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000058 | response to virus wax biosynthetic process positive regulation of posttranscriptional gene silencing ceramide biosynthetic process transcription, RNA-templated production of siRNA involved in RNA interference phosphatidylinositol phosphate kinase activity sphingosine N-acyltransferase activity RNA-directed RNA polymerase activity 3-phosphoinositide biosynthesis Inositol phosphate metabolism phosphatidylinositol phosphorylation Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM000840 | RNA-directed RNA polymerase activity transcription, RNA-templated nucleotide binding reactive oxygen species degradation superoxide radicals degradation positive regulation of posttranscriptional gene silencing response to virus wax biosynthetic process catalase activity glycerophosphodiester phosphodiesterase activity red or far-red light signaling pathway production of siRNA involved in RNA interference response to hydrogen peroxide Circadian rhythm Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase negative regulation of transcription, DNA-templated cell surface receptor signaling pathway Circadian rhythm - plant | details |
| TreatCFM001829 | RNA-directed RNA polymerase activity transcription, RNA-templated response to virus wax biosynthetic process positive regulation of posttranscriptional gene silencing positive regulation of transcription elongation from RNA polymerase II promoter elongin complex production of siRNA involved in RNA interference glycerophosphodiester phosphodiesterase activity nucleotide binding Transcription_related, Transcription regulator: IWS1 Ubiquitin mediated proteolysis translation elongation factor activity translational elongation Ubiquitin_Proteasome_system, E3 adaptor: BTB Ubiquitin_Proteasome_system, E3 adaptor: SKP1 protein ubiquitination involved in ubiquitin-dependent protein catabolic process lipid metabolic process ubiquitin-protein transferase activity | details |
| TreatCFM001844 | One carbon pool by folate esterified suberin biosynthesis cell division glucose import glucose transmembrane transport proton transport glucose transmembrane transporter activity transferase activity, transferring acyl groups other than amino-acyl groups sugar:proton symporter activity | details |
Expression profiles
 Show details about module gene expression profiling |