TreatCFM000153's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| DNA-directed RNA polymerase activity | 0.000438279 | GO:0003899 |
| Purine metabolism | 0.000558682 | KEGG pathway |
| transcription, DNA-templated | 0.006776359 | GO:0006351 |
| DNA binding | 0.020669028 | GO:0003677 |
| endonuclease activity | 0.020669028 | GO:0004519 |
| nucleic acid phosphodiester bond hydrolysis | 0.021149065 | GO:0090305 |
| chloroplast | 0.022474001 | GO:0009507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002560 | - | - |
| CRO_T005802 | - | - |
| CRO_T009997 | ATCG00180 (8.00E-89) | RPOC1|DNA-directed RNA polymerase family protein |
| CRO_T016711 | AT3G47490 (3.00E-33) | HNH endonuclease |
| CRO_T018370 | - | - |
| CRO_T018675 | ATCG00170 (1.00E-58) | RPOC2|DNA-directed RNA polymerase family protein |
| CRO_T028133 | - | - |
| CRO_T028299 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000135 | Photosynthesis plastid chloroplast photosystem II reaction center Mpp10 complex photosynthetic electron transport chain viral nucleocapsid photosystem I snoRNA binding rRNA binding chloroplast thylakoid membrane | details |
| TreatCFM000345 | DNA-directed RNA polymerase activity Purine metabolism protein methyltransferase activity protein methylation Transcription_related, Transcription factor: HB | details |
| TreatCFM000789 | Taurine and hypotaurine metabolism Golgi stack anaerobic respiration Golgi to plasma membrane protein transport Golgi vesicle docking detection of hypoxia peptidyl-cysteine oxidation Autophagy - yeast intra-Golgi vesicle-mediated transport SNARE complex vesicle fusion exocytosis nucleic acid phosphodiester bond hydrolysis oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen SNAP receptor activity SNARE binding endonuclease activity ATPase activity | details |
| TreatCFM000790 | nuclear heterochromatin Golgi stack Golgi vesicle docking regulation of methylation-dependent chromatin silencing Golgi to plasma membrane protein transport maintenance of DNA methylation Taurine and hypotaurine metabolism detection of hypoxia peptidyl-cysteine oxidation anaerobic respiration Arginine and proline metabolism Autophagy - yeast recognition of pollen intra-Golgi vesicle-mediated transport | details |
| TreatCFM000879 | DNA-directed RNA polymerase activity | details |
| TreatCFM001143 | Ribosome Purine metabolism | details |
| TreatCFM001157 | mitochondrion chloroplast large ribosomal subunit reductive pentose-phosphate cycle ribulose-bisphosphate carboxylase activity | details |
| TreatCFM001332 | Longevity regulating pathway - worm ATP-dependent helicase activity poly(A) RNA binding nucleic acid binding endonuclease activity RNA processing nucleic acid phosphodiester bond hydrolysis spliceosomal complex ATP-dependent RNA helicase activity intracellular part | details |
| TreatCFM001668 | helicase activity nucleic acid binding exocytosis vesicle fusion nucleic acid phosphodiester bond hydrolysis endonuclease activity SNARE binding SNAP receptor activity SNARE complex Spliceosome | details |
| TreatCFM001940 | mitochondrial small ribosomal subunit Transcription_related, Transcription factor: TCP regulation of leaf development solute:proton antiporter activity endonuclease activity nucleic acid phosphodiester bond hydrolysis hydrogen ion transmembrane transport | details |
Expression profiles
 Show details about module gene expression profiling |