TreatCFM000328's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 'de novo' AMP biosynthetic process | 0.001595745 | GO:0044208 |
| adenylosuccinate synthase activity | 0.004048762 | GO:0004019 |
| adenosine ribonucleotides de novo biosynthesis | 0.005838109 | plantCyc |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004338 | ATCG00800 (2.00E-09) | structural constituent of ribosome |
| CRO_T012136 | AT5G13890 (6.00E-07) | Family of unknown function (DUF716) |
| CRO_T020618 | - | - |
| CRO_T024145 | AT3G57610 (0) | ADSS|adenylosuccinate synthase |
| CRO_T028017 | AT4G02730 (7.00E-14) | WDR5b|human WDR5 (WD40 repeat) homolog b |
| CRO_T029413 | AT3G58170 (2.00E-23) | ATBS14A|BET1P/SFT1P-LIKE PROTEIN 14A |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000323 | adenylosuccinate synthase activity magnesium ion binding ATP phosphoribosyltransferase activity 'de novo' AMP biosynthetic process histidine biosynthetic process L-histidine biosynthesis pyruvate decarboxylation to acetyl CoA adenosine ribonucleotides de novo biosynthesis | details |
| TreatCFM000747 | L-histidine biosynthesis adenylosuccinate synthase activity histidinol dehydrogenase activity 'de novo' AMP biosynthetic process endoplasmic reticulum tubular network organization adenosine ribonucleotides de novo biosynthesis endoplasmic reticulum tubular network histidine biosynthetic process Group II intron splicing protein metabolic process | details |
| TreatCFM001678 | Nucleotide excision repair Base excision repair beta-tubulin binding DNA-3-methyladenine glycosylase activity protein histidine kinase binding Group II intron splicing protein metabolic process tubulin complex assembly post-chaperonin tubulin folding pathway microtubule cytoskeleton organization base-excision repair cytochrome complex assembly GTPase activator activity positive regulation of GTPase activity | details |
| TreatCFM001944 | fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) fatty acid beta-oxidation using acyl-CoA dehydrogenase lipid homeostasis acyl-CoA dehydrogenase activity acyl-CoA oxidase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor fatty-acyl-CoA binding jasmonic acid biosynthesis cell wall organization or biogenesis O-acetyltransferase activity Fatty acid metabolism Peroxisome Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
Expression profiles
 Show details about module gene expression profiling |