TreatCFM000365's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: SET | 4.94E-05 | TF family |
| response to abiotic stimulus | 0.003899268 | GO:0009628 |
| histone lysine methylation | 0.003899268 | GO:0034968 |
| histone-lysine N-methyltransferase activity | 0.011815964 | GO:0018024 |
| Lysine degradation | 0.013806304 | KEGG pathway |
| chromosome | 0.014336257 | GO:0005694 |
| histone binding | 0.015493564 | GO:0042393 |
| response to stress | 0.018454594 | GO:0006950 |
| Plant hormone signal transduction | 0.042841753 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006865 | AT2G44150 (2.00E-25) | ASHH3|histone-lysine N-methyltransferase ASHH3; SDG7|SET DOMAIN-CONTAINING PROTEIN 7 |
| CRO_T013588 | AT1G73100 (4.00E-162) | SDG19|SET DOMAIN PROTEIN 19; SUVH3|SU(VAR)3-9 homolog 3 |
| CRO_T015811 | AT4G24210 (1.00E-28) | SLY1|SLEEPY1 |
| CRO_T017465 | AT1G20870 (2.00E-31) | HSP20-like chaperones superfamily protein |
| CRO_T018762 | AT3G04960 (1.00E-34) | Domain of unknown function (DUF3444) |
| CRO_T020789 | AT5G53080 (1.00E-133) | Tetratricopeptide repeat (TPR)-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000129 | pyrimidine ribonucleosides salvage I mitochondrial respiratory chain | details |
| TreatCFM000189 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid Plant hormone signal transduction Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM000434 | ADP dimethylallyltransferase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds ATP dimethylallyltransferase activity | details |
| TreatCFM000557 | Transcription_related, Transcription factor: NF-YC ribosomal protein import into nucleus protein import into nucleus, docking protein import into nucleus, translocation NLS-bearing protein import into nucleus nuclear periphery COPII vesicle coat nuclear membrane ER to Golgi vesicle-mediated transport | details |
| TreatCFM000606 | Plant hormone signal transduction Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM000618 | dUDP biosynthetic process dTDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity ethanolamine-phosphate cytidylyltransferase activity | details |
| TreatCFM001088 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Lipoic acid metabolism nitrogen compound metabolic process transferase activity, transferring acyl groups plastid Ubiquitin_Proteasome_system, E3 adaptor: F-box Plant hormone signal transduction | details |
| TreatCFM001252 | nuclear export signal receptor activity protein export from nucleus Ran GTPase binding COPII vesicle coat SCF ubiquitin ligase complex nuclear pore ER to Golgi vesicle-mediated transport Ubiquitin_Proteasome_system, E3 adaptor: F-box intracellular protein transport | details |
| TreatCFM001527 | RNA transport nuclear membrane COPII vesicle coat nuclear periphery anion transmembrane transport NLS-bearing protein import into nucleus ribosomal protein import into nucleus protein import into nucleus, docking protein import into nucleus, translocation Ran GTPase binding inorganic phosphate transmembrane transporter activity nuclear localization sequence binding ER to Golgi vesicle-mediated transport nucleotidyltransferase activity translational initiation protein transporter activity | details |
| TreatCFM001542 | ligase activity transcriptional repressor complex Glucagon signaling pathway Toll and Imd signaling pathway postreplication repair vegetative phase change protein K63-linked ubiquitination organ senescence detection of nutrient developmental process involved in reproduction sugar mediated signaling pathway Cell cycle primary root development Apelin signaling pathway cytoplasm Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E2: UBC Ubiquitin_Proteasome_system, E3: HECT nucleus abscisic acid-activated signaling pathway Ubiquitin mediated proteolysis | details |
| TreatCFM001573 | phosphate-containing compound metabolic process cellular protein modification process translational initiation | details |
Expression profiles
 Show details about module gene expression profiling |