TreatCFM000189's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 0.002836251 | GO:0016810 |
| nitrogen compound metabolic process | 0.004719268 | GO:0006807 |
| transferase activity, transferring acyl groups | 0.018695195 | GO:0016746 |
| plastid | 0.022243424 | GO:0009536 |
| Plant hormone signal transduction | 0.037898017 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.048815855 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000209 | - | - |
| CRO_T012814 | - | - |
| CRO_T015540 | - | - |
| CRO_T015711 | AT5G66430 (1.00E-63) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T015811 | AT4G24210 (1.00E-28) | SLY1|SLEEPY1 |
| CRO_T019730 | - | - |
| CRO_T026016 | - | - |
| CRO_T027437 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000023 | Transcription_related, Transcription regulator: DDT hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups intracellular protein transport | details |
| TreatCFM000028 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds vacuolar proton-transporting V-type ATPase complex assembly nitrogen compound metabolic process retrograde transport, endosome to Golgi endoplasmic reticulum-Golgi intermediate compartment membrane | details |
| TreatCFM000032 | details | |
| TreatCFM000056 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase nitrogen compound metabolic process transferase activity, transferring acyl groups intracellular protein transport | details |
| TreatCFM000115 | phosphatidylethanolamine biosynthesis II | details |
| TreatCFM000129 | pyrimidine ribonucleosides salvage I mitochondrial respiratory chain | details |
| TreatCFM000139 | formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of embryonic development protein N-glycosylation (eukaryotic, high mannose) glycyl-tRNA aminoacylation glycine-tRNA ligase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis transferase activity, transferring hexosyl groups small GTPase mediated signal transduction embryo development ending in seed dormancy transferase activity, transferring acyl groups | details |
| TreatCFM000175 | lipid IVA biosynthesis mitochondrial respiratory chain AP-5 adaptor complex | details |
| TreatCFM000202 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI nitrogen compound metabolic process transferase activity, transferring acyl groups methyltransferase activity methylation | details |
| TreatCFM000234 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000252 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups intracellular protein transport | details |
| TreatCFM000257 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds protein N-glycosylation (eukaryotic, high mannose) gene silencing by RNA nitrogen compound metabolic process N-Glycan biosynthesis transferase activity, transferring hexosyl groups transferase activity, transferring acyl groups | details |
| TreatCFM000274 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups Purine metabolism intracellular protein transport | details |
| TreatCFM000332 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000365 | Transcription_related, Transcription regulator: SET response to abiotic stimulus histone lysine methylation histone-lysine N-methyltransferase activity Lysine degradation chromosome histone binding response to stress Plant hormone signal transduction | details |
| TreatCFM000384 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000396 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Glycerolipid metabolism phospholipid remodeling (phosphatidylcholine, yeast) O-acyltransferase activity lipase activity diacylglycerol and triacylglycerol biosynthesis nitrogen compound metabolic process lipid metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM000422 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM000434 | ADP dimethylallyltransferase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds ATP dimethylallyltransferase activity | details |
| TreatCFM000492 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups Oxidative phosphorylation | details |
| TreatCFM000518 | alkaloid biosynthetic process nitrogen compound metabolic process ajmaline and sarpagine biosynthesis vomilenine glucosyltransferase activity strictosidine beta-glucosidase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds raucaffricine beta-glucosidase activity phospholipid binding | details |
| TreatCFM000528 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Fatty acid metabolism nitrogen compound metabolic process plastid transferase activity, transferring acyl groups ligase activity | details |
| TreatCFM000557 | Transcription_related, Transcription factor: NF-YC ribosomal protein import into nucleus protein import into nucleus, docking protein import into nucleus, translocation NLS-bearing protein import into nucleus nuclear periphery COPII vesicle coat nuclear membrane ER to Golgi vesicle-mediated transport | details |
| TreatCFM000604 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups | details |
| TreatCFM000605 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000606 | Plant hormone signal transduction Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM000618 | dUDP biosynthetic process dTDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity ethanolamine-phosphate cytidylyltransferase activity | details |
| TreatCFM000619 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000666 | beta-N-acetylhexosaminidase activity UDP-glucosyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Amino sugar and nucleotide sugar metabolism phosphoenolpyruvate carboxykinase (ATP) activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds sulfotransferase activity gluconeogenesis I Cutin, suberine and wax biosynthesis | details |
| TreatCFM000672 | nitrogen compound metabolic process Transcription_related, Transcription regulator: DDT hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds plastid transferase activity, transferring acyl groups | details |
| TreatCFM000673 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000675 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cell wall macromolecule catabolic process | details |
| TreatCFM000787 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process Transcription_related, Transcription regulator: SNF2 Homologous recombination transferase activity, transferring acyl groups plastid | details |
| TreatCFM000813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000851 | AP-5 adaptor complex Protein_kinases_phosphatases, PPC:1.13.4: Leucine Rich Repeat Kinase III | details |
| TreatCFM000897 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid Carbon metabolism | details |
| TreatCFM001014 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001015 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001088 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Lipoic acid metabolism nitrogen compound metabolic process transferase activity, transferring acyl groups plastid Ubiquitin_Proteasome_system, E3 adaptor: F-box Plant hormone signal transduction | details |
| TreatCFM001154 | nitrogen compound metabolic process heme transport cytochrome complex assembly hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Transcription_related, Transcription factor: M-type heme transporter activity transferase activity, transferring acyl groups | details |
| TreatCFM001179 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM001196 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001202 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001206 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome nitrogen compound metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Phenylpropanoid biosynthesis plastid coenzyme binding transferase activity, transferring acyl groups | details |
| TreatCFM001234 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001252 | nuclear export signal receptor activity protein export from nucleus Ran GTPase binding COPII vesicle coat SCF ubiquitin ligase complex nuclear pore ER to Golgi vesicle-mediated transport Ubiquitin_Proteasome_system, E3 adaptor: F-box intracellular protein transport | details |
| TreatCFM001350 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001354 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process nucleic acid metabolic process plastid transferase activity, transferring acyl groups | details |
| TreatCFM001507 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process RNA polymerase II regulatory region sequence-specific DNA binding regulation of transcription from RNA polymerase II promoter transferase activity, transferring acyl groups | details |
| TreatCFM001527 | RNA transport nuclear membrane COPII vesicle coat nuclear periphery anion transmembrane transport NLS-bearing protein import into nucleus ribosomal protein import into nucleus protein import into nucleus, docking protein import into nucleus, translocation Ran GTPase binding inorganic phosphate transmembrane transporter activity nuclear localization sequence binding ER to Golgi vesicle-mediated transport nucleotidyltransferase activity translational initiation protein transporter activity | details |
| TreatCFM001542 | ligase activity transcriptional repressor complex Glucagon signaling pathway Toll and Imd signaling pathway postreplication repair vegetative phase change protein K63-linked ubiquitination organ senescence detection of nutrient developmental process involved in reproduction sugar mediated signaling pathway Cell cycle primary root development Apelin signaling pathway cytoplasm Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E2: UBC Ubiquitin_Proteasome_system, E3: HECT nucleus abscisic acid-activated signaling pathway Ubiquitin mediated proteolysis | details |
| TreatCFM001573 | phosphate-containing compound metabolic process cellular protein modification process translational initiation | details |
| TreatCFM001624 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups Oxidative phosphorylation | details |
| TreatCFM001704 | Ubiquitin_Proteasome_system, DUB: JAMM hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds RNA polymerase II transcription factor activity, sequence-specific DNA binding cullin deneddylation ribosomal large subunit assembly nitrogen compound metabolic process COP9 signalosome nucleoplasm transferase activity, transferring acyl groups | details |
| TreatCFM001792 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
Expression profiles
 Show details about module gene expression profiling |