TreatCFM000435's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cortical microtubule | 0.007709663 | GO:0055028 |
| BLOC-1 complex | 0.007709663 | GO:0031083 |
| ATP-dependent microtubule motor activity, plus-end-directed | 0.00974673 | GO:0008574 |
| cellulose microfibril organization | 0.010785537 | GO:0010215 |
| endosomal transport | 0.010785537 | GO:0016197 |
| Golgi organization | 0.010785537 | GO:0007030 |
| root development | 0.018677164 | GO:0048364 |
| microtubule-based movement | 0.01896602 | GO:0007018 |
| microtubule binding | 0.027681891 | GO:0008017 |
| kinesin complex | 0.046148738 | GO:0005871 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005744 | - | - |
| CRO_T007337 | AT5G60930 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T007787 | AT1G73640 (2.00E-84) | AtRABA6a|RAB GTPase homolog A6A |
| CRO_T014175 | - | - |
| CRO_T025954 | AT2G36330 (8.00E-38) | Uncharacterised protein family (UPF0497) |
| CRO_T028226 | AT2G30330 (3.00E-39) | BLOS1|BLOC subunit 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001567 | protein-disulfide reductase (glutathione) activity 5-carbamoylmethyl uridine residue modification root meristem growth Elongator holoenzyme complex tRNA wobble uridine modification meristem structural organization Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase leaf development regulation of transcription from RNA polymerase II promoter calmodulin binding | details |
| TreatCFM001695 | regulation of microtubule-based process protein localization negative regulation of programmed cell death cytoskeleton-dependent intracellular transport Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase formation of glycosidic bonds, GlycosylTransferases: GTnc ATP-dependent microtubule motor activity, plus-end-directed root development microtubule-based movement Ubiquitin mediated proteolysis | details |
| TreatCFM001742 | phosphatidylcholine metabolic process endosomal transport tetracyclic triterpenoid biosynthetic process endosome N-acylphosphatidylethanolamine-specific phospholipase D activity cycloartenol synthase activity phospholipase D activity phosphatidylcholine biosynthesis II phosphatidylcholine biosynthesis III phosphatidylcholine biosynthesis IV plant sterol biosynthesis II choline biosynthesis I choline biosynthesis III mangrove triterpenoid biosynthesis BLOC-1 complex lipid catabolic process phosphatidate metabolism, as a signaling molecule plant sterol biosynthesis root development phospholipases Glycerophospholipid metabolism Steroid biosynthesis Endocytosis S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM002091 | endosomal transport BLOC-1 complex NF-kappa B signaling pathway root development peptidyl-tyrosine phosphorylation formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: C2H2 | details |
Expression profiles
 Show details about module gene expression profiling |