TreatCFM002091's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| endosomal transport | 0.005849767 | GO:0016197 |
| BLOC-1 complex | 0.005909729 | GO:0031083 |
| NF-kappa B signaling pathway | 0.008130157 | KEGG pathway |
| root development | 0.013936293 | GO:0048364 |
| peptidyl-tyrosine phosphorylation | 0.013936293 | GO:0018108 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.029470152 | cazy family |
| Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | 0.029470152 | kinase family |
| Transcription_related, Transcription factor: C2H2 | 0.038203804 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003950 | AT4G00300 (3.00E-76) | fringe-related protein |
| CRO_T006077 | AT5G44160 (2.00E-80) | IDD8|INDETERMINATE DOMAIN 8; NUC|nutcracker |
| CRO_T018424 | AT4G39730 (4.00E-41) | PLAT1|PLAT domain protein 1 |
| CRO_T021230 | AT5G47240 (2.00E-63) | atnudt8|nudix hydrolase homolog 8 |
| CRO_T024941 | AT1G61590 (0) | Protein kinase superfamily protein |
| CRO_T028226 | AT2G30330 (3.00E-39) | BLOS1|BLOC subunit 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000263 | DNA binding cytokinin-O-glucosides biosynthesis nucleus Transcription_related, Transcription factor: SBP transcription factor activity, sequence-specific DNA binding transcription, DNA-templated regulation of transcription, DNA-templated flower development | details |
| TreatCFM000435 | cortical microtubule BLOC-1 complex ATP-dependent microtubule motor activity, plus-end-directed cellulose microfibril organization endosomal transport Golgi organization root development microtubule-based movement microtubule binding kinesin complex | details |
| TreatCFM000873 | phosphatidylcholine metabolic process calcium ion binding phospholipase D activity N-acylphosphatidylethanolamine-specific phospholipase D activity lipid catabolic process choline biosynthesis III phosphatidate metabolism, as a signaling molecule phospholipases Glycerophospholipid metabolism Plant-pathogen interaction | details |
| TreatCFM001459 | pentose phosphate pathway (oxidative branch) I Ubiquitin_Proteasome_system, E3 adaptor: DWD glucose metabolic process pentose-phosphate shunt glucose-6-phosphate dehydrogenase activity Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: ERF | details |
| TreatCFM001487 | Ribosome biogenesis in eukaryotes RNA transport | details |
| TreatCFM001742 | phosphatidylcholine metabolic process endosomal transport tetracyclic triterpenoid biosynthetic process endosome N-acylphosphatidylethanolamine-specific phospholipase D activity cycloartenol synthase activity phospholipase D activity phosphatidylcholine biosynthesis II phosphatidylcholine biosynthesis III phosphatidylcholine biosynthesis IV plant sterol biosynthesis II choline biosynthesis I choline biosynthesis III mangrove triterpenoid biosynthesis BLOC-1 complex lipid catabolic process phosphatidate metabolism, as a signaling molecule plant sterol biosynthesis root development phospholipases Glycerophospholipid metabolism Steroid biosynthesis Endocytosis S-adenosylmethionine-dependent methyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |