TreatCFM000449's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleolar ribonuclease P complex | 0.001417916 | GO:0005655 |
| auxin catabolic process | 0.001950499 | GO:0009852 |
| ribonuclease P activity | 0.010720611 | GO:0004526 |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.015084009 | GO:0090502 |
| ethylene biosynthesis I (plants) | 0.015422859 | plantCyc |
| gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) | 0.015422859 | plantCyc |
| gibberellin biosynthesis III (early C-13 hydroxylation) | 0.015422859 | plantCyc |
| leucodelphinidin biosynthesis | 0.015422859 | plantCyc |
| pinobanksin biosynthesis | 0.015422859 | plantCyc |
| Flavonoid biosynthesis | 0.018338855 | KEGG pathway |
| flavonoid biosynthesis (in equisetum) | 0.018338855 | plantCyc |
| dioxygenase activity | 0.045526243 | GO:0051213 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001817 | AT1G71730 (1.00E-22) | unknown protein |
| CRO_T010245 | - | - |
| CRO_T017578 | AT5G53020 (2.00E-116) | Ribonuclease P protein subunit P38-related |
| CRO_T024555 | - | - |
| CRO_T027848 | - | - |
| CRO_T032018 | AT1G15550 (8.00E-26) | ATGA3OX1|GIBBERELLIN 3 BETA-HYDROXYLASE 1; GA3OX1|gibberellin 3-oxidase 1; GA4|GA REQUIRING 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000036 | adenosylmethionine decarboxylase activity spermidine biosynthetic process spermine biosynthetic process spermidine biosynthesis I spermine biosynthesis Cysteine and methionine metabolism Transcription_related, Transcription factor: NAC | details |
| TreatCFM000083 | vomilenine glucosyltransferase activity strictosidine beta-glucosidase activity raucaffricine beta-glucosidase activity alkaloid biosynthetic process Transcription_related, Transcription factor: NAC Starch and sucrose metabolism | details |
| TreatCFM000098 | Cytochrome_P450, Cytochrome P450: CYP78A Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) | details |
| TreatCFM000099 | Spliceosome sulfate activation for sulfonation sulfate reduction II (assimilatory) Transcription_related, Transcription factor: NAC Ubiquitin_Proteasome_system, DUB: JAMM HTLV-I infection L-valine degradation I | details |
| TreatCFM000100 | Transcription_related, Transcription factor: WRKY Galactose metabolism | details |
| TreatCFM000101 | ajmaline and sarpagine biosynthesis RNA-dependent DNA biosynthetic process RNA-directed DNA polymerase activity Transcription_related, Transcription factor: C2H2 DNA integration DNA recombination | details |
| TreatCFM000102 | RNA-dependent DNA biosynthetic process RNA-directed DNA polymerase activity DNA integration DNA recombination aspartic-type endopeptidase activity | details |
| TreatCFM000104 | integral component of mitochondrial outer membrane nucleolar ribonuclease P complex auxin catabolic process | details |
| TreatCFM000197 | Transcription_related, Transcription factor: WRKY MAPK signaling pathway - plant | details |
| TreatCFM000333 | details | |
| TreatCFM000450 | auxin catabolic process ethylene biosynthesis I (plants) gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) leucodelphinidin biosynthesis pinobanksin biosynthesis Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) | details |
| TreatCFM000471 | details | |
| TreatCFM000526 | Cytochrome_P450, Cytochrome P450: CYP78A | details |
| TreatCFM000563 | DNA mediated transformation Transcription_related, Transcription factor: WRKY amino acid transmembrane transport Viral carcinogenesis MAPK signaling pathway - plant | details |
| TreatCFM000635 | DNA mediated transformation Viral carcinogenesis | details |
| TreatCFM000763 | details | |
| TreatCFM000767 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase protein serine/threonine/tyrosine kinase activity protein kinase activity magnesium ion transport magnesium ion transmembrane transport ATP binding magnesium ion transmembrane transporter activity protein phosphorylation | details |
| TreatCFM001374 | serine family amino acid biosynthetic process formate catabolic process phosphoglycerate dehydrogenase activity formate dehydrogenase (NAD+) activity hydrogen peroxide catabolic process response to oxidative stress cellular oxidant detoxification oxidation-reduction process peroxidase activity heterocyclic compound binding organic cyclic compound binding NAD binding | details |
Expression profiles
 Show details about module gene expression profiling |