TreatCFM000500's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| plant sterol biosynthesis | 0.005485094 | plantCyc |
| Thyroid hormone signaling pathway | 0.007798537 | KEGG pathway |
| protein kinase C activity | 0.010721403 | GO:0004697 |
| 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 0.010721403 | GO:0003854 |
| histone-lysine N-methyltransferase activity | 0.010721403 | GO:0018024 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.015102337 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.015102337 | cazy family |
| Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | 0.015102337 | kinase family |
| Transcription_related, Transcription regulator: SET | 0.015102337 | TF family |
| cellulase activity | 0.016070226 | GO:0008810 |
| histone lysine methylation | 0.016082105 | GO:0034968 |
| steroid biosynthetic process | 0.016082105 | GO:0006694 |
| Steroid biosynthesis | 0.017510444 | KEGG pathway |
| zinc ion binding | 0.019406452 | GO:0008270 |
| cellulose catabolic process | 0.021426969 | GO:0030245 |
| Starch and sucrose metabolism | 0.042500872 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008977 | AT5G47750 (5.00E-175) | D6PKL2|D6 protein kinase like 2 |
| CRO_T010439 | AT2G33630 (3.00E-29) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T013480 | AT3G09180 (5.00E-130) | |
| CRO_T021904 | AT1G71380 (0) | ATCEL3|cellulase 3; ATGH9B3|GLYCOSYL HYDROLASE 9B3 |
| CRO_T022976 | AT1G77300 (4.00E-17) | ASHH2|ASH1 HOMOLOG 2; CCR1|CAROTENOID CHLOROPLAST REGULATORY1; EFS|EARLY FLOWERING IN SHORT DAYS; LAZ2|LAZARUS 2; SDG8|SET DOMAIN GROUP 8 |
| CRO_T023603 | AT3G62970 (1.00E-35) | zinc finger (C3HC4-type RING finger) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000499 | plant sterol biosynthesis nuclear pore central transport channel nuclear pore nuclear basket Thyroid hormone signaling pathway Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription regulator: SET histone-lysine N-methyltransferase activity protein kinase C activity phospholipid binding 3-beta-hydroxy-delta5-steroid dehydrogenase activity nucleocytoplasmic transporter activity nuclear pore organization mRNA transport steroid biosynthetic process histone lysine methylation Steroid biosynthesis NLS-bearing protein import into nucleus single-stranded DNA binding nuclear membrane mediator complex RNA transport | details |
| TreatCFM001456 | formation of glycosidic bonds, GlycosylTransferases: GTnc eukaryotic translation initiation factor 2 complex multi-eIF complex eukaryotic translation initiation factor 2B complex Transcription_related, Transcription factor: FAR1 malate metabolic process cutin biosynthesis gluconeogenesis I long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis xylan biosynthesis malate dehydrogenase (decarboxylating) (NAD+) activity eukaryotic 48S preinitiation complex cell part translational initiation | details |
| TreatCFM001477 | zinc ion binding Thyroid hormone signaling pathway methylated histone binding cellulose biosynthesis plant sterol biosynthesis Steroid biosynthesis 3-beta-hydroxy-delta5-steroid dehydrogenase activity histone-lysine N-methyltransferase activity ferrous iron binding histone lysine methylation protein maturation by iron-sulfur cluster transfer steroid biosynthetic process structural molecule activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET cellulose synthase (UDP-forming) activity 2 iron, 2 sulfur cluster binding iron-sulfur cluster assembly 4 iron, 4 sulfur cluster binding cellulose biosynthetic process | details |
| TreatCFM001568 | Thyroid hormone signaling pathway positive regulation of translational elongation positive regulation of translational termination translational frameshifting formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-GATA cellulose biosynthesis phosphatidylcholine acyl editing phospholipases triacylglycerol degradation mediator complex translation elongation factor activity cellulose synthase (UDP-forming) activity ribosome binding cellulose biosynthetic process translational initiation | details |
| TreatCFM001776 | multi-eIF complex eukaryotic translation initiation factor 2 complex myo-inositol biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation L-ascorbate biosynthesis I (L-galactose pathway) L-histidine biosynthesis phytate degradation I histidinol-phosphatase activity inositol phosphate dephosphorylation inositol metabolic process eukaryotic translation initiation factor 2B complex histidine biosynthetic process mannan catabolic process inositol monophosphate 1-phosphatase activity phosphatidylinositol phosphorylation hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII mannan endo-1,4-beta-mannosidase activity ribosome binding translational initiation Fructose and mannose metabolism NF-kappa B signaling pathway eukaryotic 48S preinitiation complex | details |
Expression profiles
 Show details about module gene expression profiling |