TreatCFM001456's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.003544947 | cazy family |
| eukaryotic translation initiation factor 2 complex | 0.010385184 | GO:0005850 |
| multi-eIF complex | 0.010385184 | GO:0043614 |
| eukaryotic translation initiation factor 2B complex | 0.018453004 | GO:0005851 |
| Transcription_related, Transcription factor: FAR1 | 0.027442689 | TF family |
| malate metabolic process | 0.035401833 | GO:0006108 |
| cutin biosynthesis | 0.039243961 | plantCyc |
| gluconeogenesis I | 0.039243961 | plantCyc |
| long-chain fatty acid activation | 0.039243961 | plantCyc |
| oleate biosynthesis I (plants) | 0.039243961 | plantCyc |
| palmitate biosynthesis II (bacteria and plants) | 0.039243961 | plantCyc |
| phosphatidylcholine acyl editing | 0.039243961 | plantCyc |
| sporopollenin precursors biosynthesis | 0.039243961 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.039243961 | plantCyc |
| suberin monomers biosynthesis | 0.039243961 | plantCyc |
| xylan biosynthesis | 0.039243961 | plantCyc |
| malate dehydrogenase (decarboxylating) (NAD+) activity | 0.041527848 | GO:0004471 |
| eukaryotic 48S preinitiation complex | 0.042801304 | GO:0033290 |
| cell part | 0.042801304 | GO:0044464 |
| translational initiation | 0.049981766 | GO:0006413 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005121 | AT5G10200 (0) | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein |
| CRO_T006055 | AT4G11860 (6.00E-50) | Protein of unknown function (DUF544) |
| CRO_T009552 | AT3G23790 (4.00E-21) | AAE16|acyl activating enzyme 16 |
| CRO_T009900 | - | - |
| CRO_T019353 | AT2G13560 (0) | NAD-ME1|NAD-dependent malic enzyme 1 |
| CRO_T020017 | AT1G27600 (1.00E-46) | I9H|IRREGULAR XYLEM 9 Homolog; IRX9-L|IRREGULAR XYLEM 9-LIKE |
| CRO_T023603 | AT3G62970 (1.00E-35) | zinc finger (C3HC4-type RING finger) family protein |
| CRO_T025440 | AT2G40290 (5.00E-54) | Eukaryotic translation initiation factor 2 subunit 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000165 | stachyose degradation multi-eIF complex eukaryotic translation initiation factor 2 complex Ribosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc eukaryotic translation initiation factor 2B complex mannan catabolic process translation protein import into nucleus xylan catabolic process maturation of LSU-rRNA | details |
| TreatCFM000391 | Ribosome hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc gluconeogenesis I alpha-amylase activity DNA topoisomerase type I activity glucan 1,4-alpha-maltotetraohydrolase activity structural constituent of ribosome malate dehydrogenase (decarboxylating) (NAD+) activity translation resolution of meiotic recombination intermediates DNA topological change mitotic nuclear division malate metabolic process cobalt ion binding Homologous recombination zinc ion binding chromosome mitochondrion DNA repair | details |
| TreatCFM000500 | plant sterol biosynthesis Thyroid hormone signaling pathway protein kinase C activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity histone-lysine N-methyltransferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription regulator: SET cellulase activity histone lysine methylation steroid biosynthetic process Steroid biosynthesis zinc ion binding cellulose catabolic process Starch and sucrose metabolism | details |
| TreatCFM001477 | zinc ion binding Thyroid hormone signaling pathway methylated histone binding cellulose biosynthesis plant sterol biosynthesis Steroid biosynthesis 3-beta-hydroxy-delta5-steroid dehydrogenase activity histone-lysine N-methyltransferase activity ferrous iron binding histone lysine methylation protein maturation by iron-sulfur cluster transfer steroid biosynthetic process structural molecule activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET cellulose synthase (UDP-forming) activity 2 iron, 2 sulfur cluster binding iron-sulfur cluster assembly 4 iron, 4 sulfur cluster binding cellulose biosynthetic process | details |
| TreatCFM001756 | regulation of fatty acid biosynthetic process regulation of phosphorylation regulation of nitrogen utilization anthocyanin-containing compound biosynthetic process ajmaline and sarpagine biosynthesis acetylglutamate kinase regulator activity cellular protein metabolic process regulation of catalytic activity | details |
| TreatCFM001776 | multi-eIF complex eukaryotic translation initiation factor 2 complex myo-inositol biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation L-ascorbate biosynthesis I (L-galactose pathway) L-histidine biosynthesis phytate degradation I histidinol-phosphatase activity inositol phosphate dephosphorylation inositol metabolic process eukaryotic translation initiation factor 2B complex histidine biosynthetic process mannan catabolic process inositol monophosphate 1-phosphatase activity phosphatidylinositol phosphorylation hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII mannan endo-1,4-beta-mannosidase activity ribosome binding translational initiation Fructose and mannose metabolism NF-kappa B signaling pathway eukaryotic 48S preinitiation complex | details |
| TreatCFM001978 | formation of glycosidic bonds, GlycosylTransferases: GTnc xylan biosynthesis transferase activity anisotropic cell growth Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi Golgi organization retrograde vesicle-mediated transport, Golgi to ER histone acetylation cellulose biosynthetic process mRNA splicing, via spliceosome Spliceosome histone acetyltransferase complex S-adenosylmethionine-dependent methyltransferase activity ligase activity Golgi transport complex spliceosomal complex | details |
Expression profiles
 Show details about module gene expression profiling |