TreatCFM000519's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.002790903 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.002790903 | cazy family |
| dynein complex | 0.007960653 | GO:0030286 |
| Vasopressin-regulated water reabsorption | 0.007960653 | KEGG pathway |
| chitinase activity | 0.019315882 | GO:0004568 |
| cell wall macromolecule catabolic process | 0.019945894 | GO:0016998 |
| root epidermal cell differentiation | 0.019945894 | GO:0010053 |
| regulation of salicylic acid metabolic process | 0.019945894 | GO:0010337 |
| response to nitrate | 0.021364917 | GO:0010167 |
| multidimensional cell growth | 0.02439541 | GO:0009825 |
| chitin catabolic process | 0.02439541 | GO:0006032 |
| microtubule-based process | 0.02439541 | GO:0007017 |
| response to heat | 0.029863191 | GO:0009408 |
| response to cytokinin | 0.030221542 | GO:0009735 |
| cellulose biosynthetic process | 0.030221542 | GO:0030244 |
| response to water deprivation | 0.030221542 | GO:0009414 |
| response to salt stress | 0.031948098 | GO:0009651 |
| polysaccharide binding | 0.034520073 | GO:0030247 |
| RNA processing | 0.036012077 | GO:0006396 |
| Ribosome biogenesis in eukaryotes | 0.047999559 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009724 | AT1G23220 (2.00E-15) | Dynein light chain type 1 family protein |
| CRO_T010805 | - | - |
| CRO_T011514 | AT1G30240 (2.00E-100) | unknown protein |
| CRO_T012527 | AT3G16920 (1.00E-133) | CTL2|chitinase-like protein 2 |
| CRO_T021312 | AT4G38760 (4.00E-148) | Protein of unknown function (DUF3414) |
| CRO_T032992 | AT1G67120 (3.00E-11) | MDN1|MIDASIN 1 |
| CRO_T032993 | AT1G67120 (9.00E-05) | MDN1|MIDASIN 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000394 | protein N-glycosylation (eukaryotic, high mannose) adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Toll and Imd signaling pathway root epidermal cell differentiation regulation of salicylic acid metabolic process cell wall macromolecule catabolic process glutaminyl-tRNAGln biosynthesis via transamidation postreplication repair protein K63-linked ubiquitination glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity DNA topoisomerase activity mitochondrial translation response to nitrate Ubiquitin_Proteasome_system, E2: UBC chitin catabolic process multidimensional cell growth glutamyl-tRNA(Gln) amidotransferase complex Aminoacyl-tRNA biosynthesis Homologous recombination N-Glycan biosynthesis response to heat chitinase activity response to water deprivation response to cytokinin cellulose biosynthetic process response to salt stress ubiquitin protein ligase binding transferase activity, transferring hexosyl groups | details |
| TreatCFM000647 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K MAP kinase kinase activity lipid transporter activity activation of MAPK activity defense response, incompatible interaction MAP kinase activity embryo sac development lipid transport mRNA processing Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK cascade rRNA processing MAPK signaling pathway - plant RNA processing | details |
| TreatCFM000938 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Regulation of actin cytoskeleton chitinase activity polysaccharide binding response to nitrate cellular component organization root epidermal cell differentiation regulation of salicylic acid metabolic process cell wall macromolecule catabolic process chitin catabolic process multidimensional cell growth response to heat cellulose biosynthetic process response to cytokinin response to water deprivation response to salt stress single-organism cellular process | details |
| TreatCFM001229 | Signaling pathways regulating pluripotency of stem cells adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc chitinase activity thiol-dependent ubiquitin-specific protease activity Ubiquitin_Proteasome_system, DUB: USP Smc5-Smc6 complex RNA degradation polysaccharide binding root epidermal cell differentiation regulation of salicylic acid metabolic process cell wall macromolecule catabolic process response to nitrate seed development multidimensional cell growth chitin catabolic process protein deubiquitination response to heat cellulose biosynthetic process response to water deprivation response to cytokinin response to salt stress DNA repair ubiquitin-dependent protein catabolic process | details |
| TreatCFM001591 | Vasopressin-regulated water reabsorption osmosensor activity Transcription_related, Transcription factor: Orphans dynein complex DNA-directed RNA polymerase I complex histidine phosphotransfer kinase activity stomatal complex patterning RNA polymerase I activity seed maturation phosphorelay sensor kinase activity response to osmotic stress microtubule-based process RNA secondary structure unwinding response to water deprivation phosphorelay signal transduction system signal transduction by protein phosphorylation Purine metabolism ATP-dependent RNA helicase activity | details |
Expression profiles
 Show details about module gene expression profiling |