TreatCFM000394's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein N-glycosylation (eukaryotic, high mannose) | 0.005425475 | plantCyc |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.0059058 | cazy family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.0059058 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.0059058 | cazy family |
| Toll and Imd signaling pathway | 0.007878474 | KEGG pathway |
| root epidermal cell differentiation | 0.014910964 | GO:0010053 |
| regulation of salicylic acid metabolic process | 0.014910964 | GO:0010337 |
| cell wall macromolecule catabolic process | 0.014910964 | GO:0016998 |
| glutaminyl-tRNAGln biosynthesis via transamidation | 0.014910964 | GO:0070681 |
| postreplication repair | 0.014910964 | GO:0006301 |
| protein K63-linked ubiquitination | 0.014910964 | GO:0070534 |
| glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.015042812 | GO:0050567 |
| DNA topoisomerase activity | 0.015042812 | GO:0003916 |
| mitochondrial translation | 0.015971076 | GO:0032543 |
| response to nitrate | 0.015971076 | GO:0010167 |
| Ubiquitin_Proteasome_system, E2: UBC | 0.02011149 | ubs family |
| chitin catabolic process | 0.024116604 | GO:0006032 |
| multidimensional cell growth | 0.025527307 | GO:0009825 |
| glutamyl-tRNA(Gln) amidotransferase complex | 0.02769096 | GO:0030956 |
| Aminoacyl-tRNA biosynthesis | 0.031318997 | KEGG pathway |
| Homologous recombination | 0.031318997 | KEGG pathway |
| N-Glycan biosynthesis | 0.031318997 | KEGG pathway |
| response to heat | 0.032462432 | GO:0009408 |
| chitinase activity | 0.034054747 | GO:0004568 |
| response to water deprivation | 0.035486105 | GO:0009414 |
| response to cytokinin | 0.035486105 | GO:0009735 |
| cellulose biosynthetic process | 0.035486105 | GO:0030244 |
| response to salt stress | 0.038192108 | GO:0009651 |
| ubiquitin protein ligase binding | 0.044379615 | GO:0031625 |
| transferase activity, transferring hexosyl groups | 0.044379615 | GO:0016758 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000343 | - | - |
| CRO_T004786 | AT3G14740 (9.00E-18) | RING/FYVE/PHD zinc finger superfamily protein |
| CRO_T007161 | AT2G32000 (2.00E-43) | DNA topoisomerase, type IA, core |
| CRO_T009950 | AT1G06210 (7.00E-41) | ENTH/VHS/GAT family protein |
| CRO_T012527 | AT3G16920 (1.00E-133) | CTL2|chitinase-like protein 2 |
| CRO_T015186 | AT5G38460 (6.00E-62) | ALG6, ALG8 glycosyltransferase family |
| CRO_T017762 | AT1G48520 (2.00E-119) | GATB|GLU-ADT subunit B |
| CRO_T022760 | AT1G70650 (2.00E-51) | Ran BP2/NZF zinc finger-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000023 | Transcription_related, Transcription regulator: DDT hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups intracellular protein transport | details |
| TreatCFM000054 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP oligopeptide transport Cell cycle Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM000056 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase nitrogen compound metabolic process transferase activity, transferring acyl groups intracellular protein transport | details |
| TreatCFM000084 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) C-19 gibberellin 2-beta-dioxygenase activity gibberellin catabolic process aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity transferase activity, transferring hexosyl groups Diterpenoid biosynthesis N-Glycan biosynthesis cell wall modification pectin catabolic process response to light stimulus negative regulation of catalytic activity Pentose and glucuronate interconversions | details |
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000139 | formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of embryonic development protein N-glycosylation (eukaryotic, high mannose) glycyl-tRNA aminoacylation glycine-tRNA ligase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis transferase activity, transferring hexosyl groups small GTPase mediated signal transduction embryo development ending in seed dormancy transferase activity, transferring acyl groups | details |
| TreatCFM000160 | Toll and Imd signaling pathway activation of MAPK activity defense response, incompatible interaction mitochondrial mRNA modification protein K63-linked ubiquitination postreplication repair sugar mediated signaling pathway Protein_kinases_phosphatases, PPC:4.1.4: MAP2K MAP kinase kinase activity MAPK cascade Transcription_related, Transcription regulator: PHD Ubiquitin_Proteasome_system, E2: UBC MAP kinase activity MAPK signaling pathway - plant | details |
| TreatCFM000209 | intracellular Ubiquitin_Proteasome_system, DUB: OTU | details |
| TreatCFM000214 | tubulin binding formation of glycosidic bonds, GlycosylTransferases: GTnc lipid IVA biosynthesis Lipopolysaccharide biosynthesis organophosphate metabolic process carbohydrate derivative metabolic process protein N-glycosylation (eukaryotic, high mannose) tubulin complex assembly cullin deneddylation | details |
| TreatCFM000252 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups intracellular protein transport | details |
| TreatCFM000257 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds protein N-glycosylation (eukaryotic, high mannose) gene silencing by RNA nitrogen compound metabolic process N-Glycan biosynthesis transferase activity, transferring hexosyl groups transferase activity, transferring acyl groups | details |
| TreatCFM000269 | intracellular COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation GTP binding small GTPase mediated signal transduction intracellular protein transport | details |
| TreatCFM000273 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth transferase activity, transferring glycosyl groups aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis intracellular protein transport | details |
| TreatCFM000274 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups Purine metabolism intracellular protein transport | details |
| TreatCFM000276 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K xyloglucan biosynthetic process defense response, incompatible interaction endomembrane system organization activation of MAPK activity fucose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis salicylic acid mediated signaling pathway DNA recombination unidimensional cell growth MAPK signaling pathway - plant MAP kinase activity MAPK cascade integral component of Golgi membrane | details |
| TreatCFM000278 | cellular component organization Homologous recombination single-organism cellular process lipid transporter activity MAP kinase kinase activity activation of MAPK activity defense response, incompatible interaction Protein_kinases_phosphatases, PPC:4.1.4: MAP2K cellular response to DNA damage stimulus MAP kinase activity lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK cascade DNA metabolic process MAPK signaling pathway - plant DNA repair | details |
| TreatCFM000362 | intracellular protein transport | details |
| TreatCFM000379 | Toll and Imd signaling pathway postreplication repair fatty acid beta-oxidation protein K63-linked ubiquitination protein monoubiquitination protein import into peroxisome matrix attachment of peroxisome to chloroplast photorespiration Peroxisome Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase integral component of peroxisomal membrane Ubiquitin_Proteasome_system, E2: UBC embryo development ending in seed dormancy | details |
| TreatCFM000381 | 9-cis-epoxycarotenoid dioxygenase activity lipid transporter activity protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc lipid transport | details |
| TreatCFM000385 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process | details |
| TreatCFM000425 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) N-Glycan biosynthesis small GTPase mediated signal transduction transferase activity, transferring hexosyl groups GTP binding | details |
| TreatCFM000473 | Toll and Imd signaling pathway tryptophan metabolic process postreplication repair protein K63-linked ubiquitination Ubiquitin_Proteasome_system, E2: UBC cell wall organization or biogenesis O-acetyltransferase activity ubiquitin protein ligase binding lyase activity ligase activity ubiquitin protein ligase activity Purine metabolism | details |
| TreatCFM000483 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) N-Glycan biosynthesis transferase activity, transferring hexosyl groups | details |
| TreatCFM000515 | chloroplast accumulation movement microtubule-based movement microtubule motor activity microtubule binding geranylgeraniol kinase activity geraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity farnesol metabolic process peptidyl-proline hydroxylation phosphatidylglycerol biosynthetic process carpel development protein K63-linked ubiquitination postreplication repair long-chain fatty acid metabolic process Ubiquitin_Proteasome_system, E2: UBC Toll and Imd signaling pathway glycerol-3-phosphate O-acyltransferase activity procollagen-proline 4-dioxygenase activity long-chain fatty acid-CoA ligase activity Arginine and proline metabolism Fatty acid metabolism Glycerolipid metabolism Terpenoid backbone biosynthesis L-ascorbic acid binding | details |
| TreatCFM000516 | intracellular fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane | details |
| TreatCFM000519 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc dynein complex Vasopressin-regulated water reabsorption chitinase activity cell wall macromolecule catabolic process root epidermal cell differentiation regulation of salicylic acid metabolic process response to nitrate multidimensional cell growth chitin catabolic process microtubule-based process response to heat response to cytokinin cellulose biosynthetic process response to water deprivation response to salt stress polysaccharide binding RNA processing Ribosome biogenesis in eukaryotes | details |
| TreatCFM000541 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) ribosomal small subunit assembly mRNA binding transferase activity, transferring hexosyl groups N-Glycan biosynthesis rRNA binding | details |
| TreatCFM000550 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) transferase activity, transferring hexosyl groups N-Glycan biosynthesis | details |
| TreatCFM000568 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity fucose biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis integral component of Golgi membrane MAPK signaling pathway - plant MAP kinase activity salicylic acid mediated signaling pathway unidimensional cell growth MAPK cascade | details |
| TreatCFM000610 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination Ubiquitin_Proteasome_system, E2: UBC mediator complex ubiquitin protein ligase binding ligase activity ubiquitin protein ligase activity | details |
| TreatCFM000666 | beta-N-acetylhexosaminidase activity UDP-glucosyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Amino sugar and nucleotide sugar metabolism phosphoenolpyruvate carboxykinase (ATP) activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds sulfotransferase activity gluconeogenesis I Cutin, suberine and wax biosynthesis | details |
| TreatCFM000690 | cellular metabolic process | details |
| TreatCFM000703 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant Transcription_related, Transcription factor: FAR1 intracellular protein transport | details |
| TreatCFM000704 | Transcription_related, Transcription factor: FAR1 intracellular protein transport intracellular | details |
| TreatCFM000710 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity binding MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant intracellular protein transport | details |
| TreatCFM000713 | Toll and Imd signaling pathway Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction protein K63-linked ubiquitination postreplication repair MAP kinase kinase activity Ubiquitin_Proteasome_system, E2: UBC MAPK cascade MAP kinase activity cytoplasm MAPK signaling pathway - plant ubiquitin protein ligase binding | details |
| TreatCFM000751 | RNA transport nuclear matrix nucleobase-containing compound transmembrane transporter activity Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family Ubiquitin_Proteasome_system, DUB: USP tRNA re-export from nucleus meristem initiation tRNA binding thiol-dependent ubiquitin-specific protease activity nuclear pore Ran GTPase binding GTPase activator activity Endocytosis flower development protein deubiquitination | details |
| TreatCFM000764 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity | details |
| TreatCFM000772 | intracellular protein transport intracellular | details |
| TreatCFM000819 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination Ubiquitin_Proteasome_system, E2: UBC vindoline and vinblastine biosynthesis spliceosomal complex mRNA splicing, via spliceosome Spliceosome | details |
| TreatCFM000820 | urate degradation to allantoin I formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular protein transport intracellular transferase activity | details |
| TreatCFM000837 | Mismatch repair mismatched DNA binding inositol phosphate metabolic process mitochondrial genome maintenance mitochondrial DNA metabolic process Transcription_related, Transcription factor: SBP inositol trisphosphate kinase activity lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) intracellular response to heat intracellular protein transport | details |
| TreatCFM000848 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc intracellular mannosyl-oligosaccharide glucosidase activity N-Glycan biosynthesis oligosaccharide metabolic process protein N-linked glycosylation endoplasmic reticulum membrane DNA-directed RNA polymerase activity small GTPase mediated signal transduction | details |
| TreatCFM000871 | intracellular GTP binding small GTPase mediated signal transduction intracellular protein transport | details |
| TreatCFM000881 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant intracellular protein transport | details |
| TreatCFM000913 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant intracellular protein transport | details |
| TreatCFM000938 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Regulation of actin cytoskeleton chitinase activity polysaccharide binding response to nitrate cellular component organization root epidermal cell differentiation regulation of salicylic acid metabolic process cell wall macromolecule catabolic process chitin catabolic process multidimensional cell growth response to heat cellulose biosynthetic process response to cytokinin response to water deprivation response to salt stress single-organism cellular process | details |
| TreatCFM000956 | Toll and Imd signaling pathway polycistronic mRNA processing peptidyl-lysine methylation peptidyl-proline hydroxylation cellular manganese ion homeostasis chloroplast mRNA processing response to copper ion response to manganese ion manganese ion transmembrane transport protein K63-linked ubiquitination postreplication repair response to zinc ion regulation of sequestering of zinc ion Ubiquitin_Proteasome_system, E2: UBC Arginine and proline metabolism manganese:proton antiporter activity chloroplast nucleoid late endosome procollagen-proline 4-dioxygenase activity zinc II ion transmembrane transport protein-lysine N-methyltransferase activity zinc ion transmembrane transporter activity L-ascorbic acid binding ubiquitin protein ligase binding | details |
| TreatCFM001026 | formation of glycosidic bonds, GlycosylTransferases: GTnc 1,3-β-D-glucan biosynthesis Human papillomavirus infection Nucleotide excision repair MicroRNAs in cancer gamma-tubulin complex intracellular 1,3-beta-D-glucan synthase complex ribonuclease III activity GTP binding nuclease activity ARF guanyl-nucleotide exchange factor activity 1,3-beta-D-glucan synthase activity (1->3)-beta-D-glucan biosynthetic process cytoplasmic microtubule organization regulation of ARF protein signal transduction microtubule nucleation nucleic acid metabolic process RNA phosphodiester bond hydrolysis, endonucleolytic microtubule positive regulation of GTPase activity RNA processing | details |
| TreatCFM001050 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant intracellular protein transport | details |
| TreatCFM001095 | Endocytosis L-leucine biosynthesis Legionellosis Toll and Imd signaling pathway Ubiquitin_Proteasome_system, E2: UBC vacuolar transport postreplication repair cytokinesis by cell plate formation protein K63-linked ubiquitination cellular amino acid biosynthetic process 2-Oxocarboxylic acid metabolism hydro-lyase activity small GTPase mediated signal transduction cell plate 4 iron, 4 sulfur cluster binding isomerase activity ubiquitin protein ligase binding | details |
| TreatCFM001096 | L-leucine biosynthesis Legionellosis Toll and Imd signaling pathway Ubiquitin_Proteasome_system, E2: UBC protein K63-linked ubiquitination postreplication repair 2-Oxocarboxylic acid metabolism hydro-lyase activity response to stimulus cellular amino acid biosynthetic process protein catabolic process 4 iron, 4 sulfur cluster binding aspartic-type endopeptidase activity ubiquitin protein ligase binding isomerase activity | details |
| TreatCFM001097 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity MAP kinase activity MAPK cascade MAPK signaling pathway - plant intracellular protein transport | details |
| TreatCFM001222 | intracellular protein transport | details |
| TreatCFM001229 | Signaling pathways regulating pluripotency of stem cells adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc chitinase activity thiol-dependent ubiquitin-specific protease activity Ubiquitin_Proteasome_system, DUB: USP Smc5-Smc6 complex RNA degradation polysaccharide binding root epidermal cell differentiation regulation of salicylic acid metabolic process cell wall macromolecule catabolic process response to nitrate seed development multidimensional cell growth chitin catabolic process protein deubiquitination response to heat cellulose biosynthetic process response to water deprivation response to cytokinin response to salt stress DNA repair ubiquitin-dependent protein catabolic process | details |
| TreatCFM001321 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase activity transferase activity, transferring acyl groups ligase activity ubiquitin protein ligase binding | details |
| TreatCFM001383 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K DNA replication-independent nucleosome assembly defense response, incompatible interaction activation of MAPK activity nucleosome binding MAP kinase kinase activity MAP kinase activity MAPK cascade | details |
| TreatCFM001399 | intracellular | details |
| TreatCFM001403 | Toll and Imd signaling pathway phenylpropanoid metabolic process postreplication repair protein K63-linked ubiquitination protein homooligomerization Ubiquitin_Proteasome_system, E2: UBC NADPH-hemoprotein reductase activity ubiquitin protein ligase binding FMN binding response to abscisic acid ubiquitin protein ligase activity ligase activity | details |
| TreatCFM001425 | RNA transport nuclear pore inner ring protein import into nucleus, docking nuclear pore organization DNA topological change DNA topoisomerase type I activity structural constituent of nuclear pore Homologous recombination intracellular protein transport | details |
| TreatCFM001467 | GTP cyclohydrolase I activity RNA lariat debranching enzyme activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I tetrahydrofolate biosynthesis II tetrahydrobiopterin biosynthetic process tetrahydrofolate biosynthetic process 7,8-dihydroneopterin 3'-triphosphate biosynthetic process Folate biosynthesis RNA modification zinc ion binding RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome protein homodimerization activity RNA transport embryo development ending in seed dormancy | details |
| TreatCFM001484 | fucose biosynthetic process endomembrane system organization xyloglucan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc polyamine transmembrane transporter activity L-amino acid transmembrane transporter activity polyamine transmembrane transport aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis salicylic acid mediated signaling pathway integral component of Golgi membrane unidimensional cell growth amino acid transmembrane transport Purine metabolism antiporter activity transferase activity, transferring glycosyl groups | details |
| TreatCFM001499 | aerobic respiration Oxidative phosphorylation cytochrome-c oxidase activity hydrogen ion transmembrane transport intracellular protein transport | details |
| TreatCFM001541 | ligase activity Glucagon signaling pathway Toll and Imd signaling pathway transcriptional repressor complex glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity postreplication repair heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process protein K63-linked ubiquitination Cell cycle glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding Ubiquitin mediated proteolysis | details |
| TreatCFM001542 | ligase activity transcriptional repressor complex Glucagon signaling pathway Toll and Imd signaling pathway postreplication repair vegetative phase change protein K63-linked ubiquitination organ senescence detection of nutrient developmental process involved in reproduction sugar mediated signaling pathway Cell cycle primary root development Apelin signaling pathway cytoplasm Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E2: UBC Ubiquitin_Proteasome_system, E3: HECT nucleus abscisic acid-activated signaling pathway Ubiquitin mediated proteolysis | details |
| TreatCFM001746 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K Toll and Imd signaling pathway regulation of chromatin silencing protein K63-linked ubiquitination isoleucyl-tRNA aminoacylation regulation of histone H3-K9 methylation defense response, incompatible interaction ribosomal large subunit export from nucleus resolution of meiotic recombination intermediates activation of MAPK activity postreplication repair actin cytoskeleton organization regulation of translational fidelity ATP binding MAP kinase kinase activity isoleucine-tRNA ligase activity aminoacyl-tRNA editing activity DNA clamp loader activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family MAP kinase activity Ubiquitin_Proteasome_system, E2: UBC ribosomal large subunit biogenesis DNA replication factor C complex ubiquitin protein ligase binding MAPK cascade DNA replication Aminoacyl-tRNA biosynthesis cell cytoplasm MAPK signaling pathway - plant response to abscisic acid DNA repair | details |
| TreatCFM001823 | Toll and Imd signaling pathway protein monoubiquitination protein import into peroxisome matrix protein homooligomerization postreplication repair phenylpropanoid metabolic process attachment of peroxisome to chloroplast fatty acid beta-oxidation protein K63-linked ubiquitination photorespiration Peroxisome NADPH-hemoprotein reductase activity integral component of peroxisomal membrane cytosol Ubiquitin_Proteasome_system, E2: UBC response to abscisic acid FMN binding ubiquitin protein ligase binding | details |
| TreatCFM001852 | rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II pyrimidine ribonucleosides salvage I 4-hydroxybenzoate biosynthesis I (eukaryotes) hydroxyphenylpyruvate reductase activity glyoxylate reductase (NADP) activity hydroxypyruvate reductase activity beta-tubulin binding oxidative photosynthetic carbon pathway tubulin complex assembly post-chaperonin tubulin folding pathway microtubule cytoskeleton organization GTPase activator activity positive regulation of GTPase activity Carbon metabolism NAD binding cytosol | details |
| TreatCFM001936 | geranylgeraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity geraniol kinase activity postreplication repair carpel development protein K63-linked ubiquitination farnesol metabolic process tRNA pseudouridine synthesis farnesylcysteine salvage pathway Ubiquitin_Proteasome_system, E2: UBC Nucleotide excision repair Toll and Imd signaling pathway adenosine ribonucleotides de novo biosynthesis MAPK signaling pathway deaminase activity ABC transporters Terpenoid backbone biosynthesis pseudouridine synthase activity | details |
| TreatCFM001953 | Toll and Imd signaling pathway protein import into peroxisome matrix protein K63-linked ubiquitination attachment of peroxisome to chloroplast defense response, incompatible interaction activation of MAPK activity fatty acid beta-oxidation protein monoubiquitination postreplication repair photorespiration Protein_kinases_phosphatases, PPC:4.1.4: MAP2K integral component of peroxisomal membrane Peroxisome MAPK cascade MAP kinase kinase activity cytoplasm Transcription_related, Transcription factor: C3H Ubiquitin_Proteasome_system, E2: UBC MAPK signaling pathway - plant embryo development ending in seed dormancy MAP kinase activity | details |
| TreatCFM002140 | postreplication repair protein K63-linked ubiquitination production of ta-siRNAs involved in RNA interference mRNA export from nucleus Toll and Imd signaling pathway THO complex part of transcription export complex NAD/NADH phosphorylation and dephosphorylation Nicotinate and nicotinamide metabolism Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding ligase activity ubiquitin protein ligase activity | details |
Expression profiles
 Show details about module gene expression profiling |