TreatCFM000543's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| U6 snRNA 3'-end processing | 0.004048762 | GO:0034477 |
| 3'-5'-exoribonuclease activity | 0.005316398 | GO:0000175 |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.008490473 | GO:0090503 |
| RNA splicing | 0.008490473 | GO:0008380 |
| mRNA processing | 0.008490473 | GO:0006397 |
| photosynthetic electron transport chain | 0.008490473 | GO:0009767 |
| chlorophyll binding | 0.009815736 | GO:0016168 |
| Transcription_related, Transcription factor: FAR1 | 0.013753369 | TF family |
| Photosynthesis | 0.016205157 | KEGG pathway |
| photosystem I | 0.048650905 | GO:0009522 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000310 | ATCG00680 (1.00E-27) | PSBB|photosystem II reaction center protein B |
| CRO_T007923 | - | - |
| CRO_T010064 | - | - |
| CRO_T010076 | AT5G51170 (2.00E-48) | unknown protein |
| CRO_T013537 | - | - |
| CRO_T032214 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000135 | Photosynthesis plastid chloroplast photosystem II reaction center Mpp10 complex photosynthetic electron transport chain viral nucleocapsid photosystem I snoRNA binding rRNA binding chloroplast thylakoid membrane | details |
| TreatCFM000415 | 3'-5'-exoribonuclease activity U6 snRNA 3'-end processing mRNA processing RNA splicing RNA phosphodiester bond hydrolysis, exonucleolytic ion transport single-organism process | details |
| TreatCFM000742 | U6 snRNA 3'-end processing mRNA processing RNA splicing RNA phosphodiester bond hydrolysis, exonucleolytic 3'-5'-exoribonuclease activity peptidyl-serine phosphorylation | details |
| TreatCFM001793 | U6 snRNA 3'-end processing 3'-5'-exoribonuclease activity mRNA processing RNA splicing RNA phosphodiester bond hydrolysis, exonucleolytic protein binding | details |
Expression profiles
 Show details about module gene expression profiling |