TreatCFM000742's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| U6 snRNA 3'-end processing | 0.008581433 | GO:0034477 |
| mRNA processing | 0.022482038 | GO:0006397 |
| RNA splicing | 0.022482038 | GO:0008380 |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.022482038 | GO:0090503 |
| 3'-5'-exoribonuclease activity | 0.026967032 | GO:0000175 |
| peptidyl-serine phosphorylation | 0.045242373 | GO:0018105 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005856 | ATCG00790 (2.00E-18) | RPL16|ribosomal protein L16 |
| CRO_T010076 | AT5G51170 (2.00E-48) | unknown protein |
| CRO_T019403 | AT5G62310 (3.00E-33) | IRE|INCOMPLETE ROOT HAIR ELONGATION |
| CRO_T020373 | - | - |
| CRO_T022670 | AT1G30130 (3.00E-109) | unknown protein |
| CRO_T023897 | - | - |
| CRO_T024708 | - | - |
| CRO_T025608 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000083 | vomilenine glucosyltransferase activity strictosidine beta-glucosidase activity raucaffricine beta-glucosidase activity alkaloid biosynthetic process Transcription_related, Transcription factor: NAC Starch and sucrose metabolism | details |
| TreatCFM000135 | Photosynthesis plastid chloroplast photosystem II reaction center Mpp10 complex photosynthetic electron transport chain viral nucleocapsid photosystem I snoRNA binding rRNA binding chloroplast thylakoid membrane | details |
| TreatCFM000190 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) copper uptake transmembrane transporter activity ureidoglycine aminohydrolase activity purine nucleobase catabolic process protein import into chloroplast stroma allantoin catabolic process cellular metal ion homeostasis ureide catabolic process copper ion transmembrane transport chloroplast inner membrane protein homodimerization activity Purine metabolism | details |
| TreatCFM000197 | Transcription_related, Transcription factor: WRKY MAPK signaling pathway - plant | details |
| TreatCFM000258 | Amino sugar and nucleotide sugar metabolism Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 lysozyme activity chitinase activity chitin binding chitin catabolic process | details |
| TreatCFM000301 | vindoline and vinblastine biosynthesis mRNA surveillance pathway | details |
| TreatCFM000415 | 3'-5'-exoribonuclease activity U6 snRNA 3'-end processing mRNA processing RNA splicing RNA phosphodiester bond hydrolysis, exonucleolytic ion transport single-organism process | details |
| TreatCFM000441 | alliin lyase activity Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Wnt signaling pathway | details |
| TreatCFM000470 | Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 lysozyme activity Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM000477 | details | |
| TreatCFM000507 | ureidoglycine aminohydrolase activity purine nucleobase catabolic process ureide catabolic process allantoin catabolic process allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) Transcription_related, Transcription factor: FAR1 Purine metabolism | details |
| TreatCFM000509 | Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase guiding stereospecific synthesis activity regulation of catalytic activity phenylpropanoid biosynthetic process | details |
| TreatCFM000543 | U6 snRNA 3'-end processing 3'-5'-exoribonuclease activity RNA phosphodiester bond hydrolysis, exonucleolytic RNA splicing mRNA processing photosynthetic electron transport chain chlorophyll binding Transcription_related, Transcription factor: FAR1 Photosynthesis photosystem I | details |
| TreatCFM000598 | histidine phosphotransfer kinase activity carbon-sulfur lyase activity protein histidine kinase binding cytokinin-activated signaling pathway phosphorelay signal transduction system | details |
| TreatCFM000760 | details | |
| TreatCFM000763 | details | |
| TreatCFM000767 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase protein serine/threonine/tyrosine kinase activity protein kinase activity magnesium ion transport magnesium ion transmembrane transport ATP binding magnesium ion transmembrane transporter activity protein phosphorylation | details |
| TreatCFM000867 | benzoate biosynthesis I (CoA-dependent, β-oxidative) Oxidative phosphorylation | details |
| TreatCFM000990 | response to sucrose negative regulation of cell aging regulation of nucleic acid-templated transcription Noc complex vesicle negative regulation of flower development nuclear lumen protein targeting to vacuole vegetative to reproductive phase transition of meristem transcription cofactor activity preribosome, large subunit precursor dioxygenase activity | details |
| TreatCFM001183 | details | |
| TreatCFM001277 | oxidoreductase activity, acting on NAD(P)H 3'-5' exonuclease activity DNA-directed DNA polymerase activity DNA biosynthetic process nucleic acid phosphodiester bond hydrolysis DNA replication Oxidative phosphorylation | details |
| TreatCFM001793 | U6 snRNA 3'-end processing 3'-5'-exoribonuclease activity mRNA processing RNA splicing RNA phosphodiester bond hydrolysis, exonucleolytic protein binding | details |
| TreatCFM001832 | Longevity regulating pathway - worm cellulose biosynthesis plant-type primary cell wall biogenesis plant-type secondary cell wall biogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc cellulose biosynthetic process cellulose synthase (UDP-forming) activity cell wall organization | details |
Expression profiles
 Show details about module gene expression profiling |