TreatCFM000544's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.000413724 | cazy family |
| (1->3)-beta-D-glucan catabolic process | 0.007701867 | GO:0006076 |
| vesicle organization | 0.007701867 | GO:0016050 |
| protein targeting to ER | 0.007701867 | GO:0045047 |
| endosome to lysosome transport | 0.007701867 | GO:0008333 |
| glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group | 0.010533704 | GO:0052861 |
| positive gravitropism | 0.010996815 | GO:0009958 |
| Golgi to vacuole transport | 0.010996815 | GO:0006896 |
| auxin homeostasis | 0.010996815 | GO:0010252 |
| cell surface | 0.013733602 | GO:0009986 |
| late endosome membrane | 0.013733602 | GO:0031902 |
| retromer complex | 0.013733602 | GO:0030904 |
| multivesicular body | 0.013733602 | GO:0005771 |
| signal recognition particle, endoplasmic reticulum targeting | 0.013733602 | GO:0005786 |
| protein targeting to vacuole | 0.017307704 | GO:0006623 |
| signal recognition particle binding | 0.018425811 | GO:0005047 |
| Endocytosis | 0.020501926 | KEGG pathway |
| glucan endo-1,3-beta-D-glucosidase activity | 0.024552505 | GO:0042973 |
| extrinsic component of membrane | 0.027433132 | GO:0019898 |
| root development | 0.02841366 | GO:0048364 |
| phosphatidylinositol binding | 0.028916365 | GO:0035091 |
| Protein export | 0.02966689 | KEGG pathway |
| microtubule-based movement | 0.032782774 | GO:0007018 |
| microtubule motor activity | 0.04199311 | GO:0003777 |
| microtubule binding | 0.049791741 | GO:0008017 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005770 | AT3G16630 (3.00E-166) | ATKINESIN-13A; KINESIN-13A|P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T008338 | - | - |
| CRO_T009277 | AT1G18310 (0) | glycosyl hydrolase family 81 protein |
| CRO_T023675 | AT5G61970 (1.00E-176) | signal recognition particle-related / SRP-related |
| CRO_T032397 | AT5G23610 (8.00E-14) | |
| CRO_T032796 | - | - |
| CRO_T033662 | AT5G06140 (3.00E-38) | ATSNX1|SORTING NEXIN 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000029 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity ribonuclease inhibitor activity oxaloacetate decarboxylase activity protein serine/threonine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) regulation of RNA metabolic process | details |
| TreatCFM000545 | (1->3)-beta-D-glucan catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cell surface glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group microtubule glucan endo-1,3-beta-D-glucosidase activity microtubule-based movement Transcription_related, Transcription factor: WRKY Transcription_related, Transcription factor: C2H2 microtubule motor activity microtubule binding | details |
| TreatCFM001330 | formation of glycosidic bonds, GlycosylTransferases: GTnc ribonuclease inhibitor activity triphosphatase activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity regulation of RNA metabolic process protein targeting to ER response to light intensity plastid nucleoid signal recognition particle binding signal recognition particle, endoplasmic reticulum targeting Protein export regulation of gene expression negative regulation of catalytic activity root development | details |
Expression profiles
 Show details about module gene expression profiling |