TreatCFM001330's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002833905 | cazy family |
| ribonuclease inhibitor activity | 0.003854661 | GO:0008428 |
| triphosphatase activity | 0.003854661 | GO:0050355 |
| oxaloacetate decarboxylase activity | 0.003854661 | GO:0008948 |
| 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity | 0.003854661 | GO:0047443 |
| regulation of RNA metabolic process | 0.005719772 | GO:0051252 |
| protein targeting to ER | 0.005719772 | GO:0045047 |
| response to light intensity | 0.005719772 | GO:0009642 |
| plastid nucleoid | 0.005909467 | GO:0042646 |
| signal recognition particle binding | 0.00719239 | GO:0005047 |
| signal recognition particle, endoplasmic reticulum targeting | 0.007875215 | GO:0005786 |
| Protein export | 0.011293501 | KEGG pathway |
| regulation of gene expression | 0.020345099 | GO:0010468 |
| negative regulation of catalytic activity | 0.030620033 | GO:0043086 |
| root development | 0.030620033 | GO:0048364 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000965 | AT5G63100 (4.00E-89) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T004457 | AT1G19360 (5.00E-07) | RRA3|reduced residual arabinose 3 |
| CRO_T008442 | AT1G10522 (7.00E-45) | PRIN2|PLASTID REDOX INSENSITIVE 2 |
| CRO_T009949 | AT4G34950 (2.00E-56) | Major facilitator superfamily protein |
| CRO_T011082 | AT1G35220 (1.00E-77) | unknown protein |
| CRO_T012725 | AT5G56260 (1.00E-73) | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase |
| CRO_T023675 | AT5G61970 (1.00E-176) | signal recognition particle-related / SRP-related |
| CRO_T029773 | AT2G11890 (9.00E-31) | TTM3|Triphosphate Tunnel Metalloenzyme 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000029 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity ribonuclease inhibitor activity oxaloacetate decarboxylase activity protein serine/threonine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) regulation of RNA metabolic process | details |
| TreatCFM000094 | Transcription_related, Transcription regulator: MED6 D-myo-inositol (1,4,5)-trisphosphate degradation ethylene biosynthesis I (plants) L-methionine salvage cycle II (plants) | details |
| TreatCFM000114 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity ribonuclease inhibitor activity oxaloacetate decarboxylase activity regulation of RNA metabolic process | details |
| TreatCFM000170 | pyruvate fermentation to ethanol II ribonuclease inhibitor activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity carboxy-lyase activity RNA methyltransferase activity thiamine pyrophosphate binding | details |
| TreatCFM000266 | outer membrane | details |
| TreatCFM000408 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Indole alkaloid biosynthesis BLOC-1 complex plastid nucleoid Transcription_related, Transcription factor: LOB phosphatidylinositol dephosphorylation fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate response to light intensity Golgi vesicle budding phospholipid translocation ajmaline and sarpagine biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) | details |
| TreatCFM000458 | oxaloacetate decarboxylase activity ribonuclease inhibitor activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.1: MAP3K calcium-dependent cysteine-type endopeptidase activity regulation of RNA metabolic process receptor signaling protein serine/threonine kinase activity MAPK signaling pathway - plant cell surface receptor signaling pathway response to biotic stimulus negative regulation of catalytic activity regulation of cellular process plasma membrane | details |
| TreatCFM000544 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc (1->3)-beta-D-glucan catabolic process vesicle organization protein targeting to ER endosome to lysosome transport glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group positive gravitropism Golgi to vacuole transport auxin homeostasis cell surface late endosome membrane retromer complex multivesicular body signal recognition particle, endoplasmic reticulum targeting protein targeting to vacuole signal recognition particle binding Endocytosis glucan endo-1,3-beta-D-glucosidase activity extrinsic component of membrane root development phosphatidylinositol binding Protein export microtubule-based movement microtubule motor activity microtubule binding | details |
| TreatCFM001290 | Protein_kinases_phosphatases, PPC:4.2.3: Calcium/Calmodulin Dependent Protein Kinase (CCamK) response to endoplasmic reticulum stress Plant-pathogen interaction | details |
| TreatCFM001463 | MAPK signaling pathway plastid nucleoid response to light intensity Transcription_related, Transcription factor: NAC regulation of gene expression | details |
| TreatCFM001464 | MAPK signaling pathway response to light intensity plastid nucleoid regulation of gene expression Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM001513 | MAPK signaling pathway D-myo-inositol (1,4,5)-trisphosphate degradation xylan biosynthesis plastid nucleoid exonuclease activity response to light intensity endonuclease activity cellulose synthase (UDP-forming) activity phosphatidylinositol dephosphorylation regulation of gene expression Transcription_related, Transcription factor: NAC cellulose biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |