TreatCFM000570's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 3β-hydroxysesquiterpene lactone biosynthesis | 0.004871565 | plantCyc |
| stachyose biosynthesis | 0.004871565 | plantCyc |
| thioredoxin pathway | 0.004871565 | plantCyc |
| stomatal complex patterning | 0.005782675 | GO:0010375 |
| DNA-directed RNA polymerase V complex | 0.005782675 | GO:0000419 |
| stomatal complex development | 0.005782675 | GO:0010374 |
| DNA-directed RNA polymerase IV complex | 0.005782675 | GO:0000418 |
| Cytochrome_P450, Cytochrome P450: CYP71A | 0.009033204 | CYP450 family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009551151 | cazy family |
| Galactose metabolism | 0.017514326 | KEGG pathway |
| DNA-directed RNA polymerase II, core complex | 0.017975927 | GO:0005665 |
| biological regulation | 0.019258498 | GO:0065007 |
| cell | 0.035570357 | GO:0005623 |
| RNA polymerase II activity | 0.038531229 | GO:0001055 |
| response to stimulus | 0.039404155 | GO:0050896 |
| Purine metabolism | 0.039983053 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004220 | AT1G60470 (1.00E-100) | AtGolS4|galactinol synthase 4 |
| CRO_T014511 | AT3G21460 (7.00E-31) | Glutaredoxin family protein |
| CRO_T015391 | AT3G48280 (9.00E-129) | CYP71A25|cytochrome P450, family 71, subfamily A, polypeptide 25 |
| CRO_T016853 | - | - |
| CRO_T026374 | - | - |
| CRO_T026899 | AT2G15430 (1.00E-41) | NRPB3; NRPD3; NRPE3A; RBP36A; RPB35.5A|DNA-directed RNA polymerase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001359 | L-asparagine biosynthesis I L-asparagine biosynthesis II superpathway of L-asparagine biosynthesis 3β-hydroxysesquiterpene lactone biosynthesis stomatal complex patterning stomatal complex development L-glutamine degradation I superpathway of aspartate and asparagine biosynthesis thioredoxin pathway DNA-directed RNA polymerase IV complex DNA-directed RNA polymerase V complex Cytochrome_P450, Cytochrome P450: CYP71A hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Mismatch repair nucleic acid metabolic process DNA-directed RNA polymerase II, core complex | details |
| TreatCFM001512 | Mismatch repair hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc L-asparagine biosynthesis I L-asparagine biosynthesis II superpathway of L-asparagine biosynthesis L-glutamine degradation I superpathway of aspartate and asparagine biosynthesis thioredoxin pathway nucleic acid metabolic process beta-galactosidase activity electron carrier activity protein disulfide oxidoreductase activity organic cyclic compound binding carbohydrate binding heterocyclic compound binding | details |
| TreatCFM001691 | reactive oxygen species degradation superoxide radicals degradation superoxide dismutase activity removal of superoxide radicals formation of glycosidic bonds, GlycosylTransferases: GTnc stomatal complex development regulation of tocopherol cyclase activity stomatal complex patterning oxaloacetate metabolic process glycolipid metabolic process fatty acid biosynthesis initiation I S-methyl-5-thio-α-D-ribose 1-phosphate degradation octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) protein stabilization DNA-directed RNA polymerase IV complex DNA-directed RNA polymerase V complex Alanine, aspartate and glutamate metabolism MAPK signaling pathway - fly omega-amidase activity glucosyltransferase activity oligopeptide transport nitrogen compound metabolic process malate metabolic process RNA polymerase II activity acetyl-CoA carboxylase activity Peroxisome acetyl-CoA carboxylase complex | details |
| TreatCFM001693 | pentose catabolic process cellular carbohydrate metabolic process stomatal complex patterning stomatal complex development pentose-phosphate shunt, non-oxidative branch DNA-directed RNA polymerase IV complex DNA-directed RNA polymerase V complex reductive pentose-phosphate cycle ribulose-phosphate 3-epimerase activity pentose phosphate pathway (non-oxidative branch) Calvin-Benson-Bassham cycle Rubisco shunt RNA polymerase II activity DNA-directed RNA polymerase II, core complex small GTPase mediated signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |