TreatCFM001691's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| reactive oxygen species degradation | 7.44E-05 | plantCyc |
| superoxide radicals degradation | 7.44E-05 | plantCyc |
| superoxide dismutase activity | 0.00043417 | GO:0004784 |
| removal of superoxide radicals | 0.000523441 | GO:0019430 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.001948914 | cazy family |
| stomatal complex development | 0.008875756 | GO:0010374 |
| regulation of tocopherol cyclase activity | 0.008875756 | GO:1902171 |
| stomatal complex patterning | 0.008875756 | GO:0010375 |
| oxaloacetate metabolic process | 0.008875756 | GO:0006107 |
| glycolipid metabolic process | 0.012323796 | GO:0006664 |
| fatty acid biosynthesis initiation I | 0.013587245 | plantCyc |
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 0.013887838 | plantCyc |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 0.0155406 | plantCyc |
| protein stabilization | 0.019002624 | GO:0050821 |
| DNA-directed RNA polymerase IV complex | 0.02218939 | GO:0000418 |
| DNA-directed RNA polymerase V complex | 0.02218939 | GO:0000419 |
| Alanine, aspartate and glutamate metabolism | 0.024079365 | KEGG pathway |
| MAPK signaling pathway - fly | 0.024079365 | KEGG pathway |
| omega-amidase activity | 0.024261791 | GO:0050152 |
| glucosyltransferase activity | 0.02694958 | GO:0046527 |
| oligopeptide transport | 0.027687608 | GO:0006857 |
| nitrogen compound metabolic process | 0.029511646 | GO:0006807 |
| malate metabolic process | 0.029511646 | GO:0006108 |
| RNA polymerase II activity | 0.038767283 | GO:0001055 |
| acetyl-CoA carboxylase activity | 0.038767283 | GO:0003989 |
| Peroxisome | 0.041854536 | KEGG pathway |
| acetyl-CoA carboxylase complex | 0.049258784 | GO:0009317 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001971 | AT4G25100 (3.00E-60) | ATFSD1|ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1; FSD1|Fe superoxide dismutase 1 |
| CRO_T005199 | AT1G63420 (1.00E-142) | Arabidopsis thaliana protein of unknown function (DUF821) |
| CRO_T009330 | AT4G17140 (0) | pleckstrin homology (PH) domain-containing protein |
| CRO_T013192 | AT2G38040 (7.00E-81) | CAC3|acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit |
| CRO_T015889 | AT1G79600 (0) | ABC1K3|ABC1-like kinase 3 |
| CRO_T016655 | AT1G08830 (3.00E-63) | CSD1|copper/zinc superoxide dismutase 1 |
| CRO_T018967 | - | - |
| CRO_T020094 | - | - |
| CRO_T021036 | AT4G37235 (0.000000005) | Uncharacterised protein family (UPF0497) |
| CRO_T026042 | AT1G62200 (0) | NPF8.5|NRT1/ PTR family 8.5; PTR6|peptide transporter 6 |
| CRO_T026899 | AT2G15430 (1.00E-41) | NRPB3; NRPD3; NRPE3A; RBP36A; RPB35.5A|DNA-directed RNA polymerase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000570 | 3β-hydroxysesquiterpene lactone biosynthesis stachyose biosynthesis thioredoxin pathway stomatal complex patterning DNA-directed RNA polymerase V complex stomatal complex development DNA-directed RNA polymerase IV complex Cytochrome_P450, Cytochrome P450: CYP71A formation of glycosidic bonds, GlycosylTransferases: GTnc Galactose metabolism DNA-directed RNA polymerase II, core complex biological regulation cell RNA polymerase II activity response to stimulus Purine metabolism | details |
| TreatCFM000739 | reactive oxygen species degradation superoxide radicals degradation formation of glycosidic bonds, GlycosylTransferases: GTnc Peroxisome removal of superoxide radicals Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII peptidyl-tyrosine phosphorylation superoxide dismutase activity non-membrane spanning protein tyrosine kinase activity | details |
| TreatCFM001028 | methylhalides biosynthesis (plants) methylation 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity imidazoleglycerol-phosphate synthase activity L-histidine biosynthesis histidine biosynthetic process alpha-Linolenic acid metabolism transmembrane transporter activity Biosynthesis of amino acids S-adenosylmethionine-dependent methyltransferase activity methyltransferase activity | details |
| TreatCFM001359 | L-asparagine biosynthesis I L-asparagine biosynthesis II superpathway of L-asparagine biosynthesis 3β-hydroxysesquiterpene lactone biosynthesis stomatal complex patterning stomatal complex development L-glutamine degradation I superpathway of aspartate and asparagine biosynthesis thioredoxin pathway DNA-directed RNA polymerase IV complex DNA-directed RNA polymerase V complex Cytochrome_P450, Cytochrome P450: CYP71A hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Mismatch repair nucleic acid metabolic process DNA-directed RNA polymerase II, core complex | details |
| TreatCFM001693 | pentose catabolic process cellular carbohydrate metabolic process stomatal complex patterning stomatal complex development pentose-phosphate shunt, non-oxidative branch DNA-directed RNA polymerase IV complex DNA-directed RNA polymerase V complex reductive pentose-phosphate cycle ribulose-phosphate 3-epimerase activity pentose phosphate pathway (non-oxidative branch) Calvin-Benson-Bassham cycle Rubisco shunt RNA polymerase II activity DNA-directed RNA polymerase II, core complex small GTPase mediated signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |