TreatCFM000640's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cellular iron ion homeostasis | 0.006891526 | GO:0006879 |
| iron ion transmembrane transport | 0.006891526 | GO:0034755 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.007793238 | cazy family |
| Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII | 0.007793238 | kinase family |
| polysaccharide catabolic process | 0.009836894 | GO:0000272 |
| beta-amylase activity | 0.010825061 | GO:0016161 |
| iron ion transmembrane transporter activity | 0.010825061 | GO:0005381 |
| acyl-CoA hydrolysis | 0.016186915 | plantCyc |
| starch degradation II | 0.018869114 | plantCyc |
| cutin biosynthesis | 0.026214125 | plantCyc |
| sporopollenin precursors biosynthesis | 0.026214125 | plantCyc |
| suberin monomers biosynthesis | 0.028992193 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005863 | AT1G20870 (3.00E-33) | HSP20-like chaperones superfamily protein |
| CRO_T007749 | AT2G21500 (8.00E-05) | RING/U-box superfamily protein |
| CRO_T017300 | AT5G26820 (2.00E-125) | ATIREG3|iron-regulated protein 3; IREG3|IRON REGULATED 3; 1-Mar|MULTIPLE ANTIBIOTIC RESISTANCE 1 |
| CRO_T017955 | AT5G48370 (9.00E-39) | Thioesterase/thiol ester dehydrase-isomerase superfamily protein |
| CRO_T018247 | AT5G18670 (6.00E-135) | BAM9|BETA-AMYLASE 9; BMY3|beta-amylase 3 |
| CRO_T022681 | AT1G15910 (2.00E-44) | FDM1|factor of DNA methylation 1; IDNL1|INVOLVED IN DE NOVO 2 (IDN2) - LIKE 1; IDP1|IDN2 PARALOG 1 |
| CRO_T029101 | AT5G26820 (5.00E-61) | ATIREG3|iron-regulated protein 3; IREG3|IRON REGULATED 3; 1-Mar|MULTIPLE ANTIBIOTIC RESISTANCE 1 |
| CRO_T030354 | AT3G58690 (5.00E-53) | Protein kinase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001012 | alanine-glyoxylate transaminase activity Alanine, aspartate and glutamate metabolism identical protein binding pyridoxal phosphate binding glycine biosynthesis III arginine catabolic process to glutamate homogalacturonan biosynthesis pectin biosynthetic process polygalacturonate 4-alpha-galacturonosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB mitochondrion | details |
| TreatCFM001176 | inositol-1,3,4-trisphosphate 5-kinase activity inositol tetrakisphosphate 1-kinase activity tryptophan-tRNA ligase activity iron ion transmembrane transporter activity inositol-1,3,4-trisphosphate 6-kinase activity inositol trisphosphate metabolic process tryptophanyl-tRNA aminoacylation cellular iron ion homeostasis iron ion transmembrane transport plant ovule development acyl-CoA hydrolysis lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) Aminoacyl-tRNA biosynthesis Inositol phosphate metabolism 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis | details |
| TreatCFM001694 | Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII outer membrane-bounded periplasmic space clathrin adaptor complex Fanconi anemia pathway Lysosome cellular response to DNA damage stimulus cytochrome complex assembly DNA metabolic process | details |
| TreatCFM001831 | chiasma assembly meiotic mismatch repair involved in reciprocal meiotic recombination germ cell nucleus synaptonemal complex mismatch repair complex formation of glycosidic bonds, GlycosylTransferases: GTnc protein glycosylation damaged DNA binding mismatched DNA binding galactosyltransferase activity | details |
| TreatCFM002042 | response to gibberellin G1/S transition of mitotic cell cycle formation of glycosidic bonds, GlycosylTransferases: GTnc galactosyltransferase activity seed development protein glycosylation response to cytokinin carbohydrate binding Plant hormone signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |