TreatCFM000657's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: Pseudo ARR-B | 0.001034034 | TF family |
| glycerophosphodiester phosphodiesterase activity | 0.006820393 | GO:0008889 |
| monovalent cation:proton antiporter activity | 0.006820393 | GO:0005451 |
| Circadian rhythm - plant | 0.00712346 | KEGG pathway |
| Pyruvate metabolism | 0.00712346 | KEGG pathway |
| serine-type carboxypeptidase activity | 0.013234862 | GO:0004185 |
| proteolysis involved in cellular protein catabolic process | 0.036128796 | GO:0051603 |
| regulation of pH | 0.036128796 | GO:0006885 |
| lipid metabolic process | 0.036128796 | GO:0006629 |
| phosphorelay signal transduction system | 0.036128796 | GO:0000160 |
| hydrogen ion transmembrane transport | 0.036128796 | GO:1902600 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007231 | - | - |
| CRO_T008718 | AT4G16110 (6.00E-13) | ARR2|response regulator 2 |
| CRO_T013483 | AT4G32440 (5.00E-34) | Plant Tudor-like RNA-binding protein |
| CRO_T017827 | - | - |
| CRO_T025617 | AT1G71340 (5.00E-105) | GDPD4|glycerophosphodiester phosphodiesterase 4 |
| CRO_T026511 | AT4G23700 (1.00E-56) | ATCHX17|cation/H+ exchanger 17 |
| CRO_T030217 | AT1G11840 (5.00E-12) | ATGLX1|glyoxalase I homolog |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001190 | Circadian rhythm - plant phosphorelay signal transduction system reactive oxygen species degradation superoxide radicals degradation Transcription_related, Transcription regulator: Pseudo ARR-B Ubiquitin_Proteasome_system, DUB: JAMM catalase activity glycerophosphodiester phosphodiesterase activity monovalent cation:proton antiporter activity Transcription_related, Transcription factor: Orphans response to hydrogen peroxide red or far-red light signaling pathway Circadian rhythm negative regulation of transcription, DNA-templated regulation of pH hydrogen peroxide catabolic process | details |
| TreatCFM001191 | glycerophosphodiester phosphodiesterase activity Circadian rhythm - plant Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase Transcription_related, Transcription regulator: Pseudo ARR-B Transcription_related, Transcription regulator: Jumonji phosphorelay signal transduction system lipid metabolic process | details |
| TreatCFM001761 | L-serine transmembrane transporter activity transmembrane transport L-serine transport ribosomal small subunit biogenesis cation transport monovalent cation:proton antiporter activity regulation of pH rRNA processing 90S preribosome endomembrane system cytosolic small ribosomal subunit small-subunit processome | details |
Expression profiles
 Show details about module gene expression profiling |