TreatCFM001761's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-serine transmembrane transporter activity | 0.005909729 | GO:0015194 |
| transmembrane transport | 0.007237482 | GO:0055085 |
| L-serine transport | 0.007237482 | GO:0015825 |
| ribosomal small subunit biogenesis | 0.007237482 | GO:0042274 |
| cation transport | 0.007237482 | GO:0006812 |
| monovalent cation:proton antiporter activity | 0.008859354 | GO:0005451 |
| regulation of pH | 0.011572273 | GO:0006885 |
| rRNA processing | 0.021928594 | GO:0006364 |
| 90S preribosome | 0.031255803 | GO:0030686 |
| endomembrane system | 0.041514609 | GO:0012505 |
| cytosolic small ribosomal subunit | 0.041514609 | GO:0022627 |
| small-subunit processome | 0.041514609 | GO:0032040 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004348 | AT1G48830 (3.00E-44) | Ribosomal protein S7e family protein |
| CRO_T013483 | AT4G32440 (5.00E-34) | Plant Tudor-like RNA-binding protein |
| CRO_T016058 | AT3G62240 (4.00E-51) | RING/U-box superfamily protein |
| CRO_T022915 | AT2G13620 (4.00E-88) | ATCHX15|cation/hydrogen exchanger 15; CHX15|CATION/H+ EXCHANGER 15 |
| CRO_T022966 | AT3G06170 (1.00E-160) | Serinc-domain containing serine and sphingolipid biosynthesis protein |
| CRO_T032989 | AT5G64500 (9.00E-169) | Major facilitator superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000465 | Protein_kinases_phosphatases, PPC:4.1.1: MAP3K | details |
| TreatCFM000535 | Protein_kinases_phosphatases, PPC:4.1.1: MAP3K Ribosome 90S preribosome cis-Golgi network ribosomal small subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Protein export SNARE interactions in vesicular transport MAPK cascade activation of MAPKK activity rRNA processing ER to Golgi vesicle-mediated transport cytoplasmic translation protein transport structural constituent of ribosome MAP kinase kinase kinase activity poly(A) RNA binding MAPK signaling pathway - plant | details |
| TreatCFM000657 | Transcription_related, Transcription regulator: Pseudo ARR-B glycerophosphodiester phosphodiesterase activity monovalent cation:proton antiporter activity Circadian rhythm - plant Pyruvate metabolism serine-type carboxypeptidase activity proteolysis involved in cellular protein catabolic process regulation of pH lipid metabolic process phosphorelay signal transduction system hydrogen ion transmembrane transport | details |
| TreatCFM001003 | L-histidine biosynthesis L-serine transport protein metabolic process histidine biosynthetic process histidinol dehydrogenase activity L-serine transmembrane transporter activity chloroplast stroma protein processing protein histidine kinase binding protein-cysteine S-palmitoyltransferase activity phosphatidylinositol binding pollen development Biosynthesis of amino acids Endocytosis | details |
| TreatCFM001004 | formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis Golgi cisterna membrane polar nucleus fucosyltransferase activity fucosylation L-serine transport L-serine transmembrane transporter activity RNA polymerase II transcription cofactor activity protein-cysteine S-palmitoyltransferase activity Transcription_related, Transcription factor: WRKY mediator complex protein glycosylation defense response to fungus regulation of transcription from RNA polymerase II promoter integral component of membrane Endocytosis | details |
| TreatCFM001314 | telomere tethering at nuclear periphery posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery nuclear pore cytoplasmic filaments L-serine transport RNA export from nucleus structural constituent of nuclear pore L-serine transmembrane transporter activity nucleocytoplasmic transporter activity protein import into nucleus nuclear localization sequence binding RNA transport Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: WRKY formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular signal transduction | details |
| TreatCFM001406 | UDP-N-acetyl-D-glucosamine biosynthesis II glucosamine 6-phosphate N-acetyltransferase activity Ribosome Protein_kinases_phosphatases, PPC:4.1.1: MAP3K Transcription_related, Transcription regulator: GNAT structural constituent of ribosome UDP-N-acetylglucosamine biosynthetic process ribosomal small subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) MAP kinase kinase kinase activity poly(A) RNA binding cis-Golgi network 90S preribosome activation of MAPKK activity cytoplasmic translation MAPK cascade ER to Golgi vesicle-mediated transport rRNA processing SNARE interactions in vesicular transport protein transport Transcription_related, Transcription factor: ERF protein binding Amino sugar and nucleotide sugar metabolism MAPK signaling pathway - plant cytosolic small ribosomal subunit Golgi membrane small-subunit processome | details |
| TreatCFM001458 | Ribosome structural constituent of ribosome small-subunit processome cytosolic small ribosomal subunit fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) unsaturated, even numbered fatty acid β-oxidation maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosomal small subunit biogenesis translation 90S preribosome poly(A) RNA binding ribosomal small subunit assembly cytoplasmic translation maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) mRNA surveillance pathway rRNA processing | details |
Expression profiles
 Show details about module gene expression profiling |