TreatCFM000677's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| tRNA 3'-trailer cleavage, endonucleolytic | 0.004432624 | GO:0034414 |
| 3'-tRNA processing endoribonuclease activity | 0.009654255 | GO:0042781 |
| abscisic acid binding | 0.020902102 | GO:0010427 |
| RNA secondary structure unwinding | 0.030204674 | GO:0010501 |
| response to abscisic acid | 0.032354963 | GO:0009737 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001666 | AT3G06980 (1.00E-177) | DEA(D/H)-box RNA helicase family protein |
| CRO_T005818 | AT1G64990 (0) | GTG1|GPCR-type G protein 1 |
| CRO_T012542 | ATCG00650 (3.00E-22) | RPS18|ribosomal protein S18 |
| CRO_T013559 | AT3G13677 (3.00E-11) | unknown protein |
| CRO_T032503 | AT2G04530 (1.00E-130) | TRZ2|TRNASE Z 2 |
| CRO_T033375 | AT3G01920 (1.00E-96) | DHBP synthase RibB-like alpha/beta domain |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000678 | glutathione-peroxide redox reactions Arachidonic acid metabolism glutathione peroxidase activity | details |
| TreatCFM001355 | zeaxanthin, antheraxanthin and violaxanthin interconversion Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase Cell cycle - Caulobacter magnesium chelatase activity tRNA (guanine-N2-)-methyltransferase activity tRNA N2-guanine methylation cellular developmental process embryo development chloroplast organization primary metabolic process cellular metabolic process post-embryonic development organic substance metabolic process root development chaperone-mediated protein folding RNA modification | details |
| TreatCFM001603 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.Other: Other Protein Kinase secologanin and strictosidine biosynthesis receptor-mediated endocytosis scavenger receptor activity protein tyrosine kinase activity sinapyl alcohol dehydrogenase activity abscisic acid binding cinnamyl-alcohol dehydrogenase activity transmembrane transporter activity Galactose metabolism | details |
| TreatCFM001747 | Ubiquitin_Proteasome_system, E3: RING peptidyl-proline hydroxylation to 4-hydroxy-L-proline Arginine and proline metabolism nucleic acid binding procollagen-proline 4-dioxygenase activity RNA secondary structure unwinding L-ascorbic acid binding membrane endoplasmic reticulum membrane | details |
| TreatCFM001831 | chiasma assembly meiotic mismatch repair involved in reciprocal meiotic recombination germ cell nucleus synaptonemal complex mismatch repair complex formation of glycosidic bonds, GlycosylTransferases: GTnc protein glycosylation damaged DNA binding mismatched DNA binding galactosyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |